XLOC_035995 (BX649478.1)


Basic Information

Item Value
gene id XLOC_035995
gene name BX649478.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 48514551 ~ 48527546 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070498
TATATGTAAATGACAATGCGCTCACGTGGGCCGGATTAAAGGGATCGGTATAGCGGAAGACAGAGGCTGCATCAACACCACAGCACCTGCGAGGCCAGGTACATGACAAGGACAACACGACAGAatgacaaaaaagaaaaaccaaGAGTGATGAGGGGGAGCAAGATGGACAGAAGAGAGATGAGGAAGAGGAAATAAGCAATGCTTCTTATTTTGTTAGTGACATCTCTACAGAGAAGACTCTAAAATGAAGACACATGTCCATTGTCCATGTACCTCTGTCAGCCACCAGCGTCACCTCACTCAAACTGAAGACTCTGATAATGAAGACACATCTGCCCGTACCTCTGTCAGCCACAAGCGTCACCTCGCTCAAACTGAAGACTCTGATAATGAAGACACATGTCCCCGTACCTCAAGTTCTGTCATCACTGGCCAGAATCAGGAGATCATTCAAATGATGACAGgacagaAGGCTGCAGTGAGGCCTAGGACAGCTGATGAGCAGGCTGCTGCAGTGAAGGCAACCCTGGACAACCCTTTGTTCTGAAAAAATCTCCAGGAAAAGTGGGCAGCCAGGCTTACCTTCAAAACAATCCATTTATTCACTCCAGACCCTGGATTAACGTAAACGACTTTTGTTCATAAGACAATCCAATCCAAGAAAAGAAGAATAATTTGAGCACATCACTGTTCTGTTTAAGTTTGCTGCATGGGAACACATCTCTTAGTTTCTCTGCTGTGTTccttttatttaaaaccttttgaTTCTCTTATTGAGCATTGAGTCACTACTCAACATTTCTGTAAAATTCCCTAAAATTCAGAAAATGGTGATAAAATGTGGTCAAAAGTTAAGCTGTGTTAGAATAAATTCTTCTTGATGTTGTAGGATAACTGATAGAAATGTACACtataattaaaactatttacaCAA
>TCONS_00070499
CGTGGGCCGGATTAAAGGGATCGGTATAGCGGAAGACAGAGGCTGCATCAACACCACAGCACCTGCGAGGCCAGGTACATGACAAGGACAACACGACAGAatgacaaaaaagaaaaaccaaGAGTGATGAGGGGGAGCAAGATGGACAGAAGAGAGATGAGGAAGAGGAAATAAGCAATGCTTCTTATTTTGTTAGTGACATCTCTACAGAGAGAGTGAAAATAATAGAAGCTCGTCTTCTAGATCCCGCCAGGAGAGTGAAGTCCAAAGCACTGAAAAAGAAGACTCTAAAATGAAGACACATGTCCATTGTCCATGTACCTCTGTCAGCCACCAGCGTCACCTCACTCAAACTGAAGACTCTGATAATGAAGACACATCTGCCCGTACCTCTGTCAGCCACAAGCGTCACCTCGCTCAAACTGACTCTGATAATGAAGACACATGTCCCCGTACCTCAAGTTCTGTCATCACTGGCCAGAATCAGGAGATCATTCAAATGATGACAGgacagaAGGCTGCAGTGAGGCCTAGGACAGCTGATGAGCAGGCTGCTGCAGTGAAGGCAACCCTGGACAACCCTTTGTTCTGAAAAAATCTCCAGGAAAAGTGGGCAGCCAGGCTTACCTTCAAAACAATCCATTTATTCACTCCAGACCCTGGATTAACGTAAACGACTTTTGTTCATAAGACAATCCAATCCAAGAAAAGAAGAATAATTTGAGCACATCACTGTTCTGTTTAAGTTTGCTGCATGGGAACACATCTCTTAGTTTCTCTGCTGTGTTccttttatttaaaaccttttgaTTCTCTTATTGAGCATTGAGTCACTACTCAACATTTCTGTAAAATTCCCTAAAATTCAGAAAATGGTGATAAAATGTGGTCAAAAGTTAAGCTGTGTTAGAATAAATTCTTCTTGATGTTGTAGGATAACTGATAGAAATGTACACtataattaaaactatttacaCAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092351

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070498 False 937 processed_transcript 0.42 6 48514551 48527546
TCONS_00070499 True 979 lncRNA 0.42 7 48514575 48527546

Neighbor

gene id symbol gene type direction distance location
XLOC_035993 CABZ01070222.1 coding upstream 123873 48390562 ~ 48390678 (+)
XLOC_035992 NA coding upstream 124416 48387572 ~ 48390135 (+)
XLOC_035990 si:ch211-263k4.2 coding upstream 271554 48095911 ~ 48242997 (+)
XLOC_035991 CR381598.1 coding upstream 339128 48175308 ~ 48175423 (+)
XLOC_035989 NA coding upstream 495584 48017651 ~ 48018967 (+)
XLOC_035996 si:ch211-215j19.12 coding downstream 30554 48558100 ~ 48564416 (+)
XLOC_035997 nppal coding downstream 75852 48603398 ~ 48604351 (+)
XLOC_035998 nppb coding downstream 81975 48609521 ~ 48610544 (+)
XLOC_035999 nppa coding downstream 85494 48613040 ~ 48617664 (+)
XLOC_036000 BX323876.1 coding downstream 163923 48691469 ~ 48693254 (+)
XLOC_035979 NA non-coding upstream 1254741 47256108 ~ 47259810 (+)
XLOC_036001 NA non-coding downstream 203903 48731449 ~ 48746643 (+)
XLOC_036002 NA non-coding downstream 222707 48750253 ~ 48752276 (+)
XLOC_036005 NA non-coding downstream 382761 48910307 ~ 48910828 (+)
XLOC_036008 NA non-coding downstream 533455 49061001 ~ 49063846 (+)

Expression


Co-expression Network