XLOC_035996 (si:ch211-215j19.12)


Basic Information

Item Value
gene id XLOC_035996
gene name si:ch211-215j19.12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 48558100 ~ 48564416 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070500
GTGACAATTTTCTTCTCTGACATTGTGGGTTTTACTGCTATATCGGCCTCCTGCACTCCATTACAAGTTGTTGAGATGCTGAATAACCTCTACATGTGCTTCGACACACGCATTGACTCCTATGATGTGTACAAGGTAGAGACTATAGGAGACGCATACATGGTGGTCAGTGGACTGCCAGAAAGAAATGGAGACAGGCATGCAGATGAGATCGCTAAAATGTCCCTGGATCTGGTGGCTGCGGTCAGACAGGTGCCGATACCCCATATGCCAACCAAACGCCTTCAGCTCCGCGCCGGAATACACACTGGTCCTTGTGTTGCTGGAGTTGTTGGATACAAGATGCCTCGGTATTGTTTGTTTGGAGACACAGTCAACACAGCTTCCCGAATGGAATCTACCAGCTTGCCGCAGAAGATTCACGCAAGCTCTGCTACATATCTGGCACTCATGAAGGACAATGCATATGAACTGCAGCTGAGGGGTGAGGTTGAAGTAAAGGGAAAAGGAAAAATGGACACCTACTGGTTGATT

Function

symbol description
si:ch211-215j19.12 Predicted to enable guanylate cyclase activity and peptide receptor activity. Predicted to be involved in cGMP biosynthetic process and receptor guanylyl cyclase signaling pathway. Predicted to act upstream of or within cyclic nucleotide biosynthetic process and intracellular signal transduction. Predicted to be active in plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104072

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070500 True 534 mRNA 0.48 5 48558100 48564416

Neighbor

gene id symbol gene type direction distance location
XLOC_035994 si:ch211-263k4.2 coding upstream 16143 48480529 ~ 48541957 (+)
XLOC_035995 BX649478.1 coding upstream 30554 48514551 ~ 48527546 (+)
XLOC_035993 CABZ01070222.1 coding upstream 167422 48390562 ~ 48390678 (+)
XLOC_035992 NA coding upstream 167965 48387572 ~ 48390135 (+)
XLOC_035990 si:ch211-263k4.2 coding upstream 315103 48095911 ~ 48242997 (+)
XLOC_035997 nppal coding downstream 38982 48603398 ~ 48604351 (+)
XLOC_035998 nppb coding downstream 45105 48609521 ~ 48610544 (+)
XLOC_035999 nppa coding downstream 48624 48613040 ~ 48617664 (+)
XLOC_036000 BX323876.1 coding downstream 127053 48691469 ~ 48693254 (+)
XLOC_036001 NA coding downstream 167033 48731449 ~ 48746643 (+)
XLOC_035991 CR381598.1 non-coding upstream 382677 48175308 ~ 48175423 (+)
XLOC_035989 NA non-coding upstream 539133 48017651 ~ 48018967 (+)
XLOC_036002 NA non-coding downstream 185837 48750253 ~ 48752276 (+)
XLOC_036005 NA non-coding downstream 345891 48910307 ~ 48910828 (+)
XLOC_036008 NA non-coding downstream 496585 49061001 ~ 49063846 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_06269145_06275358 NA coding CI01000050 null 6269145 ~ 6275358 (+)