XLOC_035992


Basic Information

Item Value
gene id XLOC_035992
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 48387572 ~ 48390135 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072280
tgctgttaatttacggcaaaattttaacagtataatcCTGTTATTGTCAAAAGCAGTATGTTGCTGTTTTCTTACAGTTTTTGAAATGACTTAGAcaaaatttaacattattttactgtttttatcacactaatgtaaaaaaacagcAATCAACAGTATTTTTCGAACAGAAAACATCAGCCATCACATGTGGATTTTCATCCTTTTGTTTACTGTGACTTACTCGGTAAGTGCACctttattttgctcattttacACAAAATACACATTTGTGATTCCACATAGGCTAACTGGATGCTGATATTGTAACTTTTTTACATCTATTTTAGTGCTAAATCTGTCAATGTGCAAACTGCATCTGCATTGAGTGGAACTGGATTTCTGACACAGATATTTCCTGATTACACGGTAAGTCAGAATATGATATATAAAAATGATATAGGCTATAAGCTTATCTACAAAGTCAGTTTTTAAACATATGTAGCAACAAAGTAGTATTGATTTATGTAGCATGATGAAAAGATTGTCATCTCATTGCTAATTTTAGCTTTAGCTTTTAATAGCTACCTAATATGGCTTCAATGTAGgctttgataaaacatttatttccctAATGCTGTGTTTGCAAATTTTACTGTAGTTGGTTTGTATTGTAATGCTACTTTGTCGAGTACAATTGGCTAATCACCACGATAAACTGTTTTATATGTCCATTTCAGTGCTGAACCTGTGAACATGCTAACTGCATCATAGAGTGGAGCTGGATTTCTGATACAGATATTGATTACTGATTACAAGGTGAGTTTAATGAAACATGATAACAtggtaaagttattattatttgctatgTGGTATTATTGTCCTAATAACTGaacatacaattaaaaaatgttaCGCATACATTATGGTTGTTAATTTTGTCTCTTTCCTCATCATTGTAATTCTTGTCTTAGGCATCTTCTACTGTACCTGATGTAGAAAAGACCCTTGAACTACCTGCAATTCCTTGACTGATACTTTTTGGTATGTTTAGAACTGTATTTTATTACTTAAGCAACTAAGGGTGTTTTCTCTGTATTTTAGCAAACATGGTAAATTcttttgaacaaaacaaaatacacaaatacataaattaaatgttcTGCCATATTTTATCCAAGCTTTCATTCACCTTTGGTGAATTTTACTAAATTTACTAAATTACTCCATTTTAGTTGTTTAACACTTAGTTGTTTAACACGCTATGTTGAtcataaatattaagttaaataaatcacaaacatTGCAGTGACAATTTCACAATAcacagtatatactgtacatgttgaTTTCACTGTACATGGTGAGTCCACAATCAACATTTTCAAATGCATGTACTGTGTTAAAAGAACAGGGCTTTGAGACCAAGTAAAATTACTTCTGCTTCCCTCACATATATTTTCAACTAGgctataaaaaataacatttcatgCGACTgctgacattgtttttttcttttaattgttttaggaGAAAAACCAGGAAGCTACATTCATAAATGGATGATCATTTTTGAGGGGCAAATAATCTGTAAAAGCATCCAGCCAATTTTTCTGTCTGGTATAGCGGCTGTGTTTTCATCTTACGACATTTTCAATGTGGAGAACCAAGCTGAGGCTGCATGCACATTGGAATTAATTCAGAGGTTagattcatatatttatttttcttcacattATTATCATATAAACTTTAACCCACACTAATTCTGAATGTATGCATTTTTCAGAAGCTTCATGGGTAAACCCTGAAAAAGGCTCCAAGAGTGGACACATCCTATCGAAGGGAATGGGGAAGGTCACCCACAAAAATAATTGTCAACACTAAGGTTGCCAGTTTACTTAAAGAAGCTATTGGACTTTGAGTGGGATGTCATATAAgtgacaccacacacacacacacacacacacacacacacacacacacacacacacaccttacacATCCTCTTCACTAATGGCACTCATTTTATTGTGTTAGTCGCGTACTTTTTTTCAGGTGTTTGTTCTTGAATACCTAAACTGTTCAttgtattcttttttatttcttactAACTAATTCTGTAATTCACTTAGAAGTTTTCAGAGTAGTAATCGTTGTAGTAATTCCACTTTATTTTCCATTGCCagtaattttgaaatatttaaatgtaataagatGTAATAAAACTTGAAGTTACACTGCATTTTTTAGTTTTAGCATTGTTTCCAATAAGGCTATATGTGTGCATTgtattaaactgtgtttttataacaaataaaaaatgtatatatacctGTTTTCTTAGCAGTTTATTTCTCAGGATAACATATTTGTAGTTTACagttaaaaattcaaataaacattaattaaccgttacttttgacagtaaattactgttaatgtagaaaataacagctttttgctgtatttttaaaaaacagtaaCAACCTGTAAATTTCAACTACAGCTAGATGCTGTTAATTTAACAGTAACTTGCTGGCAACTGTGCTGCCAGTAACTtgctgttttttaacgggacaatt

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0016493 C-C chemokine receptor activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0004950 chemokine receptor activity molecular_function
GO:0019956 chemokine binding molecular_function
GO:0019957 C-C chemokine binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:0001637 G protein-coupled chemoattractant receptor activity molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072280 True 2564 lncRNA 0.32 1 48387572 48390135

Neighbor

gene id symbol gene type direction distance location
XLOC_035990 si:ch211-263k4.2 coding upstream 144575 48095911 ~ 48242997 (+)
XLOC_035991 CR381598.1 coding upstream 212149 48175308 ~ 48175423 (+)
XLOC_035989 NA coding upstream 368605 48017651 ~ 48018967 (+)
XLOC_035988 mfn2 coding upstream 438669 47897734 ~ 47948903 (+)
XLOC_035987 plod1a coding upstream 491755 47850073 ~ 47895817 (+)
XLOC_035993 CABZ01070222.1 coding downstream 427 48390562 ~ 48390678 (+)
XLOC_035994 si:ch211-263k4.2 coding downstream 90394 48480529 ~ 48541957 (+)
XLOC_035995 BX649478.1 coding downstream 124416 48514551 ~ 48527546 (+)
XLOC_035996 si:ch211-215j19.12 coding downstream 167965 48558100 ~ 48564416 (+)
XLOC_035997 nppal coding downstream 213263 48603398 ~ 48604351 (+)
XLOC_035979 NA non-coding upstream 1127762 47256108 ~ 47259810 (+)
XLOC_035976 CR792439.1 non-coding upstream 1228539 47154662 ~ 47159033 (+)
XLOC_035974 BX000472.1 non-coding upstream 1315235 47072220 ~ 47072337 (+)
XLOC_036000 BX323876.1 non-coding downstream 301334 48691469 ~ 48693254 (+)
XLOC_036001 NA non-coding downstream 341314 48731449 ~ 48746643 (+)
XLOC_036002 NA non-coding downstream 360118 48750253 ~ 48752276 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G261700 NA unknown CI01000063 null 252412 ~ 274450 (+)