XLOC_035976 (CR792439.1)


Basic Information

Item Value
gene id XLOC_035976
gene name CR792439.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 47154662 ~ 47159033 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070472
CAACTGCAATAAGACAAAGTTAGAGACAGATTGATGGAGAATactgttaaaggggtggtccacagtgcATTTTTAGGGCTTGGTTGTGttcataagatgcaaagcaatgtgtgctcatgcttcatttgtagaaaatcacgtaATTTTCTCAtacatcttactttgattatatacagctactcagctaacatgataACAACTCTCATATTTCCTatttcctctaaaaggcccgccctcaagagcctctgattggtcagctaacataatgtgctgtgatttgcggatCGGCAATCTGAAGTGACATAAAGAGGGTTgccaaatgttaaaaaaagggacaatatttatttgaatatttaaaaacaacaacgaaATTAGGAATGTAAGTCAGGAAATGTCTCTCGATTTTAATTCACTGTCAATCTGAAGGGTATTAAAGAGGGTTGccaaatgcttaaaaaaatggGTCAATATTTATTTgagtatttaaaaacaacaacgaaATTAGGAACTCAAGTCAGAAAATGTCTCTCGATTTAAATTCTCCGTCAATCTGAAGTGAAATAAAGAGGGTTGCCAAATGCTAAAAAAAACGTGTCAATATTcaagtatttaataaaaacaaaacaaccaagAAAATGTATTTAAGAATGTAAGTCAGGAAATGTCTCTCGATTTCAATTCTACGTCAATCTGATGTGACATAAAGAGGGTTgccaaatgttaaaaaaaggacaatatttatttgtgtataaaaaaaaaaatgtatttagggTTGCAAGTCAGGAAATGTCTCTCGATTTCAATTCTCCGTCAATCTGAAGGGTAATAAAGAGGGTTGCCAAATGCTTAAAAAACAGGGCAATATTTTTTTTgagtatttaaaaacaacaacaaaatcaaaaTTAGAAACGCAAGTCAGGAAATGTCTCTCAATTTCAATTCTTTGTCAgtctaaagtaaaataaagagggTTGccgaatgttaaaaaaaaagaggacAATATTTATGAGTATGAAAAAAACCTAACAAAATGTATTTAGGAATGCAAGTCAGAAAATGTTTCCTGATTTCAATTCTACATCAATCTGAAGAGTGAAAAAGGGTTGCCAAATGCTTTAAGATGGGTCAATATGTATTGAGTTgagtataaaaaaaactaaatgtatttaGGAATTTAAGTCAGGAAATGTCTGTCAATCTGAAGGGTAATGTAAAGGGTtgccaaatgtttaaaaaaaaggtcaatattTATTTgagtataaaataaacaaaaacaaaatgtatttaggGATGTATGTCAGGAAATGTCTCTCGATTTTAATTCTCCGTCAATCTGAAGTGTATTAAATAGGGTTGCCAAATGCTTAAAAATGgcttaatatttatttaagtatttaaaaacaacaacaacaaaattaggAATGTAAGTCAGGAAATGTCTCTCGATTTCAATTCTCCGTCAATTTAAGGGTAACTAAGAGGGTTGCCAAACGCTAAAGAAACGAGTCAACATTcaagtatttaaaaaacaaaaaatttaagaaTGTAAGTCAGGAAATGTCTCTTGATTTCAATTCTACATCAATCTGAATGGTAAGAGGGTTGCCAAATGCTCAAAAAACTGGTCAATACTTATTCaggtataaaaacaaaacacatttaggAATTTAAGTCAGGAAATGTCTCTCGATGTCAATACACTATTAATCTGAAGGGTAATAAAGAGGGTtgccaaatgtaaaaaaaatgggtcaatatttatttcagtataaaaaaaaacaaatacatttaggaATGTCAGGAAATGTCTCTCGATTTCAATTCTTTATGAATCTGAAGGGTAATAAAGAGGGTTGtcaaatgctttaaaatgtgtcaatatttatttatttaaaaacaacaacaaaatta

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0035295 tube development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0010468 regulation of gene expression biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097853

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070472 True 1911 lncRNA 0.31 2 47154662 47159033

Neighbor

gene id symbol gene type direction distance location
XLOC_035975 arhgef16 coding upstream 10834 47099033 ~ 47143828 (+)
XLOC_035972 espn coding upstream 66134 46939391 ~ 47088528 (+)
XLOC_035974 BX000472.1 coding upstream 82325 47072220 ~ 47072337 (+)
XLOC_035973 BX000472.2 coding upstream 94147 47060401 ~ 47060515 (+)
XLOC_035971 FO704898.1 coding upstream 388117 46766429 ~ 46766545 (+)
XLOC_035977 si:dkeyp-100a1.6 coding downstream 29121 47188154 ~ 47197872 (+)
XLOC_035978 mthfr coding downstream 60074 47219107 ~ 47252552 (+)
XLOC_035979 NA coding downstream 97075 47256108 ~ 47259810 (+)
XLOC_035980 plch2a coding downstream 183553 47342586 ~ 47622532 (+)
XLOC_035981 si:ch211-251b21.1 coding downstream 474405 47633438 ~ 47665026 (+)
XLOC_035970 NA non-coding upstream 444814 46708220 ~ 46709848 (+)
XLOC_035960 NA non-coding upstream 1007960 46045163 ~ 46146702 (+)
XLOC_035989 NA non-coding downstream 858618 48017651 ~ 48018967 (+)
XLOC_035991 CR381598.1 non-coding downstream 1016275 48175308 ~ 48175423 (+)
XLOC_035992 NA non-coding downstream 1228539 48387572 ~ 48390135 (+)
XLOC_035993 CABZ01070222.1 non-coding downstream 1231529 48390562 ~ 48390678 (+)

Expression


Co-expression Network