XLOC_035981 (si:ch211-251b21.1)


Basic Information

Item Value
gene id XLOC_035981
gene name si:ch211-251b21.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 47633438 ~ 47665026 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070479
GAACAATAATAAGAGGGTGACTACAGTTTTCGGGTTACTGGCGGTAAAATGTCTCCATTAGGACTCATCTTGGTTTCCTCAGCACTTCTGGCTGGTCTCTGCACTGCAGgaccaCAGCCATTGAAGGTTACAACCATCAAGGAGGAACCATATGCAATGTCTAAAGGCTCTGAGTTGGAGGGCTTCTGCATTGACATGCTGTCAGCTATTTCTAATAAATTAGGTTTTAAGTATGATGTTCATCTCGTGAAGGACGGCCGATATGGCAAAACAGACGACAGTGGCAACTGGAACGGAATGATTGGAGAAGTTGTCAGAGGAGAAGCAGATATCGCTGTGGCGCCGCTTACTCTTACAGCCCAGCGTGAGGCAGTTGTGGACATGTCCAAACCCTTTATGCAAACAGGCCTTAGTTTCATCATGAGGAAAGACTTGGGTTCTGATGACTCCCAGTTCCTGAGTCTTCTTAAACTGTTCTCCACTGAGATGTGGATGGGAGTTCTGGTTGCCTACCTGTTGACCTCCATTTGTATCTTCTTGGTGTCACGGATCAGCCCCTGTGAGTGGGAGCAACCAGAGAAAGACAACAATTCCTTCACGCTCTCACACAGTTTTTGGTATACTGTTGGAGCACTGACACTTCAAGGTGCTGGACCCCACCCCAAGGCTCTTTCAGGACGTGTCATTACCTCCATCTGGTGGATTTTTTCACTGGTGCTGCTTGCGTGTTACTTCGCCAACCTCAGTTTATGGCTGCACTCAGACAACCAGCAGCTGTCAATCAAGACCTTTGAAGACCTTGCTAATCAAAATGTCATAGAGTACGGTACCATTAAAGACTCCTCATCTTTCAATTTCTTCAAGAACTCCAACAACCCCACATACCACAGAATCTACGAGCACATCAAGGAAGCCCAGAGTTATTCGCTCAATGCGGCTGAAGGTTTCCGCAGGGCTCAGAAAGGCAACTATGCTTTCATTGGCGAATCTGTGTCCCTGGACCTGGCAGTGGCGAGATACTGTAACCTCACACGTGCCCCTGAAATCATTGGCATGAGGGGGTACAGCATTGCTGCTCCATTAGGCTCCCCTTTGATAAAGAACCTAAGTGTTGCTATTCTCCGTCTGAGTGAGTCTGGCGAACTGGATTACTTTCGCAGTAAGTGGTGGGCTAGCAGCTGTGTGGCTAAAGACAGCAAAGGTGCTCCACTAAAGCCTGCAAGTCTCAAGGGAGTCTTCTTACTACTGGCATTCGGTCTGGGACTGGGAATTTTCCTGGCTTTGATGGAACTAGCTGCCAAATCACGCAAAGTCGCTAACAGTGAGCAGAAATCCTGCTGTTCGGTGATGTCTGCTGAGCTCAGTCAGCGCTTCAGAGGTGGCGAAGTGGCAACACCAGAATCCTCTGAGAAAAACAAAGCCTAAACATCATTAAAGCACTGACACGTATGCATTTCATCGCTTAAAGTTCATCATGTCCAAATCCGTTTTATATGCTACTAACTCTACCGAGTGGGTGAGGGTCATGAAACCATTGCATTTGTTGTGTACACTTTGAAATTTAAGCATCGCTTAAAGAGGATTTAGTCAGGTTTTCTCAACAGATCTACTGTGCATTAGTCTTTACAGTGATGCATTTTATTGGCAGAATagccaaatgtatttttttattttatttatttcggtATTAATCATGACATATTTTTGGTttggtggttcactccgctgtggcgactcctgataaataagggattaagcctaaggaaaataaataaatgaatgaatatttttggtTTCATGACACTCACCTTGATAATATTGTCATAGTTTATCTACAGAatgaatttgtttcttttattgcgTCTTATTGCATTAAACAAGTctaagttttagttttattttggtttacaTAAAGAGATGGAGGACACCTCAGTTTAATAATGTCATGTTACACTCTTTTATTGCAATATTACTCACACTGCAGTTAAGTTTTTCCTTAACATTTTGACAATCCCCAAGATTCTGTCCATGTCCTAACATCCaaccttttttaatgtgtgtatacagtatgcaTGTAAGAGAAAATTGCAGATAAgttcaaatgttttcttttactcCTATAATACAAAATGATGCATGATGTTTTCCATGAATATGTACACTGTGAAGAATCATTCCCGTTTTTTTatgtcattgttttattttagagaCTTTTTTTCTTAACGAAATAAAAAGATGAACTATGCTGTTTGCATATGTAA

Function

symbol description
si:ch211-251b21.1 Predicted to enable kainate selective glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be part of kainate selective glutamate receptor complex. Predicted to be active in postsynaptic membrane and presynaptic membrane. Is expressed in central nervous system; proliferative region; and spinal cord.

GO:

id name namespace
GO:0035249 synaptic transmission, glutamatergic biological_process
GO:0006811 ion transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0042734 presynaptic membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0032983 kainate selective glutamate receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0015277 kainate selective glutamate receptor activity molecular_function
GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential molecular_function
GO:0005216 ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060809-5 Predicted to enable kainate selective glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be part of kainate selective glutamate receptor complex. Predicted to be active in postsynaptic membrane and presynaptic membrane. Is expressed in central nervous system; proliferative region; and spinal cord.

Ensembl:

ensembl_id ENSDARG00000007275

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070479 True 2261 mRNA 0.42 10 47633438 47665026

Neighbor

gene id symbol gene type direction distance location
XLOC_035980 plch2a coding upstream 10906 47342586 ~ 47622532 (+)
XLOC_035979 NA coding upstream 373628 47256108 ~ 47259810 (+)
XLOC_035978 mthfr coding upstream 380886 47219107 ~ 47252552 (+)
XLOC_035977 si:dkeyp-100a1.6 coding upstream 435566 47188154 ~ 47197872 (+)
XLOC_035976 CR792439.1 coding upstream 474405 47154662 ~ 47159033 (+)
XLOC_035982 dpp9 coding downstream 12182 47677208 ~ 47723544 (+)
XLOC_035983 CU499311.1 coding downstream 33072 47698098 ~ 47698470 (+)
XLOC_035984 si:ch211-243p7.3 coding downstream 61893 47726919 ~ 47751940 (+)
XLOC_035985 ndufa7 coding downstream 139258 47804284 ~ 47811955 (+)
XLOC_035986 pimr185 coding downstream 152428 47817454 ~ 47819452 (+)
XLOC_035974 BX000472.1 non-coding upstream 561101 47072220 ~ 47072337 (+)
XLOC_035973 BX000472.2 non-coding upstream 572923 47060401 ~ 47060515 (+)
XLOC_035971 FO704898.1 non-coding upstream 866893 46766429 ~ 46766545 (+)
XLOC_035989 NA non-coding downstream 352625 48017651 ~ 48018967 (+)
XLOC_035991 CR381598.1 non-coding downstream 510282 48175308 ~ 48175423 (+)
XLOC_035992 NA non-coding downstream 722546 48387572 ~ 48390135 (+)
XLOC_035993 CABZ01070222.1 non-coding downstream 725536 48390562 ~ 48390678 (+)
XLOC_035995 BX649478.1 non-coding downstream 849525 48514551 ~ 48527546 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_06593242_06603104 NA coding CI01000050 null 6593242 ~ 6603608 (+)