CI01000050_06593242_06603104


Basic Information

Item Value
gene id CI01000050_06593242_06603104
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 6593242 ~ 6603608 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_06593242_06603104.mRNA
GACCACAAACATTAAGAGTTACAACCATCAAGGAGGAGCCATATGCAATGTCTAAAGGCTCTGAACTGGAGGGCTTCTGCATCGACCTGCTGTCAGCTGTTTCTAAGAAATTAGATTTCAAATATGATATTCATCTTGTGAAGGATGGCCGATATGGCATAACAGATGACAGCGGCAACTGGAACGGCATGATTGGAGAAGTTGTAAGAGGGGAAGCAGACATCGCTGTGGCGCCACTAACTCTTACAGCTAAACGCGAGACAGCTGTGGACATGAGCAAACCCTTCATGCAGACTGGCCTTAGTTTCATCCTAATGAAAGACTTGGCCTCAGATGACTCGCAGTTCCTGAGCCTCCTTAACCTGTTCTCCACTGAGATGTGGATGGGCTTACTGGTTGCCTACCTGTTGACCTCTGCCTGTATCTTCTTAGTGTCACGGATTAGCCCCTGTGAATGGGAACAACCAGAGAAAGAAAATGTCTTCACGCTCTCACACAGTTTTTGGTATACTGTGGGAGCACTGACTCTTCAAGGTGCTGGTCCTCACCCAAAGGCTCTTTCAGGACGGGTTATTACAGCTATCTGGTGGCTGTTTTCATTAGTGTTGCTTGCTTGTTACTTTGCCAACCTCAGTTTATGGCTGCATTCAGACAACCAGCAACTGTCAATCAAGAGCTTTGAAGACCTTGCTAATCAAAACTTGATTGAGTACGGTACCATTAAAGATTCTTCCTCTTTTGCATTCTTCAAGAACTCAAACAACCCCACATACCACAGAATCTATGAGCACATCAAGGATGCCCAGAGCTATTCACTCACTGCAACAGAAGGTATCCACAGGGCTCTGAAAGGCAACTATGCTTTCATCGGCGAATCTGTATCCCTCGACCTGGCAGTGGCGAGATACTGTAACCTTACACGTGCCCCAGAAATCATTGGCATGAGGGGATACAGCATTGCTGCTCCTTTAGGCTCTCCTTTAATTAAAAATCTAAGTGTTGCCATTCTCCAACTGAGCGAGTCTGGTGAGCTGGATTACTTGCGCAGTAAGTGGTGGTCCAGCAGTTGTGTGGCTAAAAATGGCAAGAGTGCTCCACTGAAGCCCGCCAGTCTGAAGGGAATCTTCTTATTACTGGCACTTGGTCTGGGACTGGGGCTTTTCTTGGCTTTAATGGAACTGGCCGCCAAATCACGCAAAATCGCTAACACTCAGCAGAAATCCTGCTGCTCTGTGATGTCTGCTGAACTCAGTCAGCGCTTCAGAGGTGGCGAGGTGACGTCTCCGGAATCCTCTGAGAAAAGCAAAGCCTAAAAAAGCATTGACACACACATTTAATCACTTAACATTCATTATGTTCACATCAAATTTATTCATATTATGATTTGAACACATTATACTAACTAAACTGGGTGGGTGAACCTCATGAAAACATTCCATTTATTGTGCACACTTCAAAACCGAAGAAGAAATGAAATGATTCAGTGCATTACGATTTTTTGAATTCCAGTGTTTTCCAGTTGTTGATTTGTTTTTTGTTACAGTAATGAGAATGAGATTTTTTTCATATCTCACTTATTTTTCTATGAATTATGACTTATGTTTTTGACAGGTTTCATGAGATTCACCCAGGTAATAGTCTAGCATTTTATCTATAGACAAAATATGGTTCTATTAATTTCTCTTATTTTATTAAACAAGTTTAAGGTTTGATTTTATTTCGGTTTAGTTGGATGGATTAGTATTTTATTAATATGTTATGTTCTTTCAATACAAGAATGGTTACAGCAGTTAAGGTATAAAATTTATTGGGAGATA

Function

GO:

id name namespace
GO:0006810 transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_06593242_06603104.mRNA True 1817 mRNA 0.42 8 6593242 6603608

Neighbor

gene id symbol gene type direction distance location
CI01000050_06518156_06558229 PLCH2 coding upstream 34424 6517454 ~ 6558818 (+)
CI01000050_06495478_06497593 NA coding upstream 95509 6495239 ~ 6497733 (+)
CI01000050_06413155_06428371 NA coding upstream 164259 6412512 ~ 6428983 (+)
CI01000050_06343875_06352994 MTHFR coding upstream 239001 6343319 ~ 6354241 (+)
CI01000050_06311242_06312395 NPPA coding upstream 279812 6311171 ~ 6313430 (+)
CI01000050_06610618_06631765 DPP9 coding downstream 7010 6610618 ~ 6631770 (+)
CI01000050_06683472_06696145 PPIH coding downstream 79408 6683016 ~ 6696569 (+)
CI01000050_06698115_06702523 YBX1 coding downstream 94507 6698115 ~ 6702523 (+)
CI01000050_06704526_06704754 NA coding downstream 100918 6704526 ~ 6705886 (+)
CI01000050_06814252_06815192 NA coding downstream 210556 6814164 ~ 6815626 (+)
G215702 NA non-coding upstream 234412 6358573 ~ 6358830 (+)
G215728 NA non-coding upstream 313777 6279229 ~ 6279465 (+)
G215722 NA non-coding upstream 320858 6272147 ~ 6272384 (+)
G215667 NA non-coding upstream 420355 6171014 ~ 6172887 (+)
G215774 NA non-coding downstream 102402 6706010 ~ 6707922 (+)
G216552 NA non-coding downstream 204159 6807767 ~ 6808079 (+)
G216571 NA non-coding downstream 337430 6941038 ~ 6952420 (+)
CI01000050_06966299_06980426 NA non-coding downstream 357666 6964336 ~ 6980623 (+)
G216612 NA non-coding downstream 470111 7073719 ~ 7074023 (+)
G215539 NA other upstream 962039 5629610 ~ 5631203 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 1183594 5407585 ~ 5409417 (+)
CI01000050_04591548_04592778 NA other upstream 2000193 4589926 ~ 4593049 (+)
G214717 NA other upstream 2484962 4107582 ~ 4108280 (+)
CI01000050_03938328_03956122 RHOBTB2 other upstream 2636198 3931890 ~ 3957044 (+)
G215773 NA other downstream 57580 6661188 ~ 6665703 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035981 si:ch211-251b21.1 coding NC_007119.7 CM002892.2 47633438 ~ 47665026 (+)