G215667


Basic Information

Item Value
gene id G215667
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 6171014 ~ 6172887 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU244666
AGCTGAGGGTACCTAAACCCTATTGAGCATCTGTGGGGCATCCTCAAACGGAAGGTGAAGGAGCGCAAGGTCTCTAACATCCACCAGCTCCATGATGTCGTCATGGAGGAGTGGAAGAGGACTCCAGTGGCAACCTGTGAAGCTCTGGTGAACTCCATGACCAAGAGGGTTAAGGCAGTGCTGAAAAATAATGGTGGCCACACAAAATATTGACACTTTGGGCCCAATTTGGACATTTTCACTTAGGGGTGTACTCACTTTTGTGGTCAGCGGTTTAGACATTAATGACTGTGTGTTGAGTTATTTTGAGGGGACAGCAAATTTACACTGTTATACAAGCTGTACACTCACTACTTTACATTGTAGCAAAGTGTCATTTCTTCAGTGTTGTCACATGAAAAGATGTAATAAAATATTCACAAAAATGTGAGGGGTGTACTCACTTCTGTGAGACTGTATGTATAGATAGAGAGAGAGAGACAAAAAACAGAGCAAACTTAATAACTTTAAAATGAAAGAGAACAGAAAATATCAAAATAAAATTATTAAAAATATGAAAAACCATGTTAGTATATCAGTGATACTAAAATAACACTAATTACAACAGACAGTAATGTTGACTAACACCTTGCTGTACAGTAAGGGTTTATTTTCTTACTTTTTTTTTTTCTTTTGTGATAAAATCTGACTTGGACATGTCCTTGACAGGTTTCACTGTCTGAGAAGAGCTGATAGGAACCTGGTGGTGAAACGAAGGTGTCATCAGCACAGCATGTCGATTACAGATGACATTCCTAAATCTGCAATAGAGTGCTGCTTGAATGCAATTACGTGACAGGGACATCTCTACATGATTCACCATATGCAACAGATTAGGCTAAACCCATCATTTGTATGTGTTGTCTAGTGGAGTTTCATAATAACTTTATCTGGTCTTAAAGTTGCTCCATTACTTCTTTTCATTCTTCTTCCCCCCACTGTCTTTCTTGTCTCATCTTTACAGCACCTCCTTCATCATGTGTTTGTCCGCAGCCCCCACAACTCTTATATAACTGCTCCCCTTATAGAAACCACACACATTTAAGAACACGCTTTGTGTTTGAGCCCTCGGTGAGACCATAAAAGCGGCACTTAAGTGAAATGCAAGAGGACAGGGGGAAACGGAGACTATCAATCTCATAATTTGTGAAAAAGTAGGAAGACACCTTCATTTCACATGGTACCGCTGTAAATTCCTTGTTAGGTCATTAAGGCATTCTGATGCCAGTAAGAAAATGGTTAGGTAGTTCTCGGTCATCTCGCCGCTGCAGGAGCCGCCCATTGAAGACGAGCGCAGACTCTGACAGCTCGCTGCACCGTGAGGGAAATCCCCTCCGCATAGATGCAATAAAAACCCAGCTGCAGCGAGGAAACTGAGACGGGAAAGTTAAACGTGTGGAGTCTGTTCTCTGGCCTCTGATAAAGTCGTGTCGCTCATAGCAGACTTCATGTCTGTGTGTCTGTGCTGGACAGAGGTAATTACCACAGGCTCTGATGTTACACAATCCCACTTTCTCAAATGCCACAGTAGTAGTTATAGACCGTACCAAGAGGTCAAAGAATCACCTTAACTTCCCCTTTGTGGCCCTGCATAAATAAGAGTAACTGTGCTTTTGCATAGTTTATTGGCTACATCAGTATATTAGCTCACTTCCTGTGACTTCATAATCACCACTGGCTTTTGAACCAGGACATATTGCCTTAAGCAAAACTGTTATTATTGGTAGAGTTGGCTGAGTGAAAGCAATCAAGCCCATGACCTTGGTGTTCAATAGTTATAATTTAGTTTTCCTGACCGTTTTCACCCTCTCTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244666 True 1854 lncRNA 0.42 2 6171014 6172887

Neighbor

gene id symbol gene type direction distance location
CI01000050_05881217_05905972 MFN2 coding upstream 264733 5881217 ~ 5906281 (+)
CI01000050_05845707_05846552 NA coding upstream 324174 5845279 ~ 5846840 (+)
CI01000050_05819139_05823958 NA coding upstream 347056 5819074 ~ 5823958 (+)
CI01000050_05774182_05793383 WRAP73 coding upstream 377116 5774182 ~ 5793898 (+)
CI01000050_05545206_05550365 NA coding upstream 620464 5543514 ~ 5550550 (+)
CI01000050_06261124_06264271 NA coding downstream 88237 6261124 ~ 6264830 (+)
CI01000050_06269145_06275358 NA coding downstream 96258 6269145 ~ 6275358 (+)
CI01000050_06302230_06302696 NA coding downstream 128848 6301735 ~ 6302764 (+)
CI01000050_06307476_06308324 NA coding downstream 134589 6307476 ~ 6308696 (+)
CI01000050_06311242_06312395 NPPA coding downstream 138284 6311171 ~ 6313430 (+)
CI01000050_06086847_06251892 PRDM16 non-coding upstream 29566 6086847 ~ 6251892 (+)
G215687 NA non-coding upstream 197468 5973320 ~ 5973546 (+)
G215679 NA non-coding upstream 228047 5942747 ~ 5942967 (+)
G215656 NA non-coding upstream 253094 5917606 ~ 5917920 (+)
G215653 NA non-coding upstream 261059 5909722 ~ 5909955 (+)
G215722 NA non-coding downstream 99260 6272147 ~ 6272384 (+)
G215728 NA non-coding downstream 106342 6279229 ~ 6279465 (+)
G215702 NA non-coding downstream 185686 6358573 ~ 6358830 (+)
CI01000050_06413155_06428371 NA non-coding downstream 235615 6412512 ~ 6428983 (+)
G215774 NA non-coding downstream 533123 6706010 ~ 6707922 (+)
G215539 NA other upstream 539811 5629610 ~ 5631203 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 761366 5407585 ~ 5409417 (+)
CI01000050_04591548_04592778 NA other upstream 1577965 4589926 ~ 4593049 (+)
G214717 NA other upstream 2062734 4107582 ~ 4108280 (+)
CI01000050_03938328_03956122 RHOBTB2 other upstream 2213970 3931890 ~ 3957044 (+)
G215773 NA other downstream 488301 6661188 ~ 6665703 (+)

Expression


Co-expression Network