CI01000050_06261124_06264271


Basic Information

Item Value
gene id CI01000050_06261124_06264271
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 6261124 ~ 6264830 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_06261124_06264271.mRNA
AGACACCGTAATGGAGAGGGCTACAATGGGATTGTGATCAAATGTAATGTTCGGGTGTCACTTCGAACACAGACCAAACAAGATGGATTTGACTGGCCTATCACAGGGAATCTGCTTGATAATGTGCTGTTTAAAAACTTGCAGCAGTGTTGTATTGGAATATACTACCAGTTCGCCCCAGACTTCGCCTCCATAGCTACACCGCTGACTGAGATGTTGACCAAAGCTGTGAGAAACCAGCTACCATTGACAGAGGAGTGTGAGAGTGCTTTCAAGACTCTCAAGGAATGGATTTGCTCTCACACAGTCCCGCAAAGCCTAAACTTCTCCCAGCGATTCTTGGTCCAGGTAGATGCTTCTGCCACATGGACCGGAGCTGTCCTGGCACAGGGATTGACGGGAAGGAAAGAAAAAGAGTGCCTATCAAGTGGTCCTGAGAGAGCCTCTGTTACTACTTACTGTGAAGGGAGTCAGATCTAGGAACTGACCATTGGCCCCTGTGCTGGATCAATGCAATGAAGGATCATGATGCCCAAGTGACCTATCCTCCTATTGCACCTGGTCATTCAAGCCACTGCACATATTCCCCTCTGCTACAGTATAACACACACGTCGCACCTACACACATACATTCAGATTGATTGTTTGTTTTGTCTCACCCATTTAATGTTGTATGTTGTTTGGTTTCGCGATCAGAGTAGATCTTCATAATCTCTCCACAAACACTTATTTTGATTGTTGACTAAGATATATAAGTATGTTTGATTTTAACTTTAACTGTAGTGTGCTATTCCATATTGCCTTTAAAGTTAATATATTTTAAATGTAGGCCTATTAAACTGCAACATCATTACAAATGCGTAATTTCAAATATATTTAAATATATGGCACAAGTTTCAATAGAAATGACGCTAAGGTAATTTAGTTTACTATAAATGTCAGTGCATTCGACATTAAAGTAGGTCAAAAAAGTGACACTTAAGTGGGTCAAAAAGCACTCTAACAATTCATCTAATTGCATTTAATCATTTAAACTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_06261124_06264271.mRNA True 1039 mRNA 0.40 3 6261124 6264830

Neighbor

gene id symbol gene type direction distance location
CI01000050_06086847_06251892 PRDM16 coding upstream 9232 6086847 ~ 6251892 (+)
CI01000050_05881217_05905972 MFN2 coding upstream 354843 5881217 ~ 5906281 (+)
CI01000050_05845707_05846552 NA coding upstream 414284 5845279 ~ 5846840 (+)
CI01000050_05819139_05823958 NA coding upstream 437166 5819074 ~ 5823958 (+)
CI01000050_05774182_05793383 WRAP73 coding upstream 467226 5774182 ~ 5793898 (+)
CI01000050_06269145_06275358 NA coding downstream 4315 6269145 ~ 6275358 (+)
CI01000050_06302230_06302696 NA coding downstream 36905 6301735 ~ 6302764 (+)
CI01000050_06307476_06308324 NA coding downstream 42646 6307476 ~ 6308696 (+)
CI01000050_06311242_06312395 NPPA coding downstream 46341 6311171 ~ 6313430 (+)
CI01000050_06343875_06352994 MTHFR coding downstream 78489 6343319 ~ 6354241 (+)
G215667 NA non-coding upstream 88237 6171014 ~ 6172887 (+)
G215687 NA non-coding upstream 287578 5973320 ~ 5973546 (+)
G215679 NA non-coding upstream 318157 5942747 ~ 5942967 (+)
G215656 NA non-coding upstream 343204 5917606 ~ 5917920 (+)
G215722 NA non-coding downstream 7317 6272147 ~ 6272384 (+)
G215728 NA non-coding downstream 14399 6279229 ~ 6279465 (+)
G215702 NA non-coding downstream 93743 6358573 ~ 6358830 (+)
CI01000050_06413155_06428371 NA non-coding downstream 143672 6412512 ~ 6428983 (+)
G215774 NA non-coding downstream 441180 6706010 ~ 6707922 (+)
G215539 NA other upstream 629921 5629610 ~ 5631203 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 851476 5407585 ~ 5409417 (+)
CI01000050_04591548_04592778 NA other upstream 1668075 4589926 ~ 4593049 (+)
G214717 NA other upstream 2152844 4107582 ~ 4108280 (+)
CI01000050_03938328_03956122 RHOBTB2 other upstream 2304080 3931890 ~ 3957044 (+)
G215773 NA other downstream 396358 6661188 ~ 6665703 (+)

Expression


Co-expression Network