CI01000050_04591548_04592778


Basic Information

Item Value
gene id CI01000050_04591548_04592778
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 4589926 ~ 4593049 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_04591548_04592778.mRNA
CTATAAAAATACAGAAAGCAGCCTGTGTGATTTGTATTTGATGATTTATTTCATTTTCTCAATGGTGGTCAATTCTAAGCTCAAGAAAAGCTAAAATTGGGTTAAAGACAGAAAATGCCTTTTCCACAATAAGAAAACTTTATTTCATTTAATGTGAAAATTAAATTATATCTCAGTATGGGCGTTTTCACAATTCTTATGCAAGAATAAAGCAGCCAAATACATGACAAGCCTGAGCTTTGACTATTTCTTATTAAAATAAATATTTTATATGTCTAACTATAGAGATTTTAAGTAACTAGAACTTTTTGTACACCACGTACATTATAAACCACTGAAATCGGTTGATAAATGTAAACGTTATTTTTGTTTTCATTCAGAAAAACCGCAGCTCGTCCGTTTACTTGCATTTGTTAACAGCTCAGTCTTGCCCCGCACAATATGGCAGACTCATTGACGTATCGCAGCAACAGTCCAAAGAGGCCAATAGGGCGTCTAGTGTTTATTATAATGTCTATGTTGCCACAACGTAAATGTGTTTGCTGGGCAGTTGCCCATCCCTGACTTAAAGAAACACTCCACTATTTTTGAAAATAGGCTCATTTTCCAACTCCCCTAGAGTTAAACAGTTGAGTTTTACCATTTTCGAATCCATTCAGCCGATCTCCGGGTCTGGCGGTAGCACTTTTAGCTGCAGCTTAGCATAGATCATTGAATCTGATTAGACCGTTAGCATCTCTCTTCAAAAATAGTGCAGTGTTCCTTTAATATAAGAGGTAAATCATACACAGTACACCGAGTTCATTCACCTTCTCTTTATTTAAAATCATGGTCATGGTCATACAGTGAAAAAGCCAAAAGGTCTGGCCCCTGAACACCAACTCTGTATGAGAAGGGGTTTGATGGAACCCTAATTTTCTTCACCCATGGTGGATCACAAAAGAGACACTTTGCAGAATGTACAAGCTGCTCTTACTTTCCACCAAGATCTGTGGGTTACTTTCTGTGCTTGCAAATGAATCAAACACATTGCAGTAGTGTATTTTCCTTTGTTAGACACATTCTACCTTGTTGTCTAACATTATCTCAATATCCACAATTTTGCTTTCATATATTGAGTATTAAAATTCTTGGTCTGGCTTGGCTGGACTAGCTTGTGTTTAAGGTCATAATGTTGGCTATTGAATATGCTAAGGGCAAAAAAAGAGTTCAACATTTGTTAATACACAGTGAGGAAATCACTTGGGGCTGACACAATCATAATATAATTGAGAAATATGTAAGAATATCAGTTAACATCTGTTGCGAAAGTGATTGTGAAACAGCCTGCTGTTGATACAATGAAAAATACTTAACTTTAGATAACGATTTCACAATGAACCACAAATTCAGCAACCAATAACCATACAATAAGACTACAAATATTCACAAAAATAAATTTCACTCATTCTATATCCATAAAGGTACTAAGAGGCTCATCATGCATACGTTGAAGACATGAAACGTATTTTGCTGCACAAAAGTGCAAAGGTCTTCTTTTAAACAAATTGATCATCTGTGCTCATGTGGTTTGGCCAGATGCTCCGCCCTCTTCTGTTTTGTTTAAAAAGACCTAATGTGCTATGACTGCATTTCATCAGACCATCATCTGCGCTAAACTTGCAAAAATGACATCTTTGGCTCTGGTTTTGGTATTTTGTGCCTTTGTCTCTTTAAGCGATTCTTACTGTTTCCATGAACGTGTAAAACCAGGGGCAAGATATTGTACGGATGCAGATGATAAATCCCAGCATCCAGTAGGAAGTACTTGGACAAACAACAGATGCATCCGATGCACATGCTCCTCCAACATGATGTCATGCTGTGACATGATGGGTAAACCCATAATCAAGACTGGAGGCTGCATTGTGAAGTATGATTACAGAACATGCACATTTAAAGTGTTTCATCCAGAAGATCCCACCATTATGTGTTCCTATGGTGCTGTTGGAAAATAATTTCCAATGATTGAAAATACAAATCAGTGATGTGTACGTATTTTGACTAAAATGAATATAAACTGCTTTTGGATCCAAACTGGATTATCAATTGTAATTA
>TU243790
CATTTCATCAGACCATCATCTGCGCTAAACTTGCAAAAATGACATCTTTGGCTCTGGTTTTGGTATTTTGTGCCTTTGTCTCTTTAAGCGATTCTTACTGTTTCCATGAACGTGTAAAACCAGGGGCAAGATATTGTACGGATGCAGATGATAAATCCCAGCATCCAGTAGGAAGTACTTGGACAAACAACAGATGCATCCGATGCACATGCTCCTCCAACATGATGTCATGCTGTGACATGATGGGTAAACCCATAATCAAGACTGGAGGCTGCATTGTGAAGTATGATTACAGAACATGCACATTTAAAGTGTTTCATCCAGAAGATCCCACCATTATGTGTTCCTATGGTGCTGTTGGAAAATAATTTCCAATGATTGAAAATACAAATCAGTGATGTGTACGTATTTTGACTAAAATGAATATAAACTGCTTTTGGATCCAAACTGGATTATCAATTGTAATTAATAAACAACTAAAAAAGGTTAAATCTTGTTAACCAAAAGGTCTAGCATTCAAGGCTTTCCTTCTTACTTTTATCAAAGAAAAAGCTCTTATTTTTAAATTAAAGCTAATAAGAGAACATCTTATATCTGTAAAATTAGTTTATACCTAGCACTTGTCCATGTATAGAGGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_04591548_04592778.mRNA False 2097 mRNA 0.36 4 4589926 4592878
TU243790 True 639 TUCP 0.36 4 4591555 4593049

Neighbor

gene id symbol gene type direction distance location
CI01000050_04430129_04436139 NA coding upstream 152469 4429979 ~ 4437457 (+)
CI01000050_04406761_04429903 DISP3 coding upstream 160023 4406761 ~ 4429903 (+)
CI01000050_04303341_04330327 DNM1L coding upstream 258685 4303341 ~ 4331241 (+)
CI01000050_04281992_04287535 NA coding upstream 302124 4281992 ~ 4287802 (+)
CI01000050_04275924_04277061 NA coding upstream 312279 4275924 ~ 4277647 (+)
CI01000050_04617015_04691858 ANTXR1A, ANTXRL, ANTXR1 coding downstream 23859 4616737 ~ 4691974 (+)
CI01000050_04700488_04701991 NA coding downstream 107466 4700344 ~ 4702040 (+)
CI01000050_04759894_04762802 NA coding downstream 167016 4759823 ~ 4763101 (+)
CI01000050_04865991_04906702 AGTPBP1 coding downstream 273028 4865906 ~ 4907415 (+)
CI01000050_05014220_05023731 NA coding downstream 421342 5014220 ~ 5024172 (+)
G214875 NA non-coding upstream 427 4588689 ~ 4589499 (+)
G214784 NA non-coding upstream 16370 4571831 ~ 4573556 (+)
G214868 NA non-coding upstream 29730 4559580 ~ 4560196 (+)
G214862 NA non-coding upstream 42026 4547570 ~ 4547900 (+)
G214795 NA non-coding upstream 46889 4506759 ~ 4543037 (+)
G214877 NA non-coding downstream 6094 4598972 ~ 4601810 (+)
G214930 NA non-coding downstream 113043 4705921 ~ 4707929 (+)
G215309 NA non-coding downstream 155763 4748641 ~ 4748911 (+)
G215319 NA non-coding downstream 178061 4770939 ~ 4779258 (+)
G214717 NA other upstream 481646 4107582 ~ 4108280 (+)
CI01000050_03938328_03956122 RHOBTB2 other upstream 632882 3931890 ~ 3957044 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other upstream 781187 3805143 ~ 3808870 (+)
CI01000050_02852118_02864754 RNF122 other upstream 1724104 2852118 ~ 2865822 (+)
G212927 NA other upstream 1814793 2774839 ~ 2775133 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 814707 5407585 ~ 5409417 (+)
G215539 NA other downstream 1036732 5629610 ~ 5631203 (+)
G215773 NA other downstream 2068310 6661188 ~ 6665703 (+)

Expression


Co-expression Network