G214795


Basic Information

Item Value
gene id G214795
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 4506759 ~ 4543037 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU243700
GGTCCAAACATTTTTTGGGGCAAATAATTGACTTAAAATTGTCTACTGAGCACAACAGTACACTAATTCATATCTGTTTAAACATTTGCAGAATAGCATGCTTATTTCTACTGTTTTTCAATTTTGAATGCTAACTCCTACACACACACATATCGTACTGGTATACAGCTAAACAGACTTGTCTTATCTGATGTTGAATTCTGTCCCTTGTTCCCATTTTCTTCATCACCTCTCGCATTTTTTCTTTCCGACCTTCTGGGGTGAAAACATGATAAAACTAGAGGCTAATTATGAGAAAAATCGCTGTCATTTTGTCAGATTCCAACAGCAACCTGTTGCTGTATTTGGGAATGTGGGAACTGTTTCTTGACAGGCTTTTCTCTATTGGTTTAATATGACTTCAAGTTCTCTTCCTGAGACTCTGAGTGCCAATTAAGCCTGACACAGTTTATATAGTTTATATAAACCATTCCCATACACGCAAACACAAACACTCAAACTCACACATACATACACACTTACCCGTATCGGTGTGATTCAGAATTGTGACCGTTCTCTGGGCTAAATTCACAATGCGGTCCACTTTAAACATGCGCATATCTTCCTCATCCAGCGCAATGTCTCCAAGATAAGCCACAGCTTTGCAGGGATCTTTATAGTCGATCACATCTGATGGGCTGCTGGTCTCCACATAGTAGCCGGGATCAATCGCGTCCAAATCGAGCGCTGCGAGCACGGCGAAGCTGGAGAGCAGGAACGCACACCTCGCTGCGAGGTCCATGATTGGGCTAGTGGAGCAGGAATAGAGGTACAGACGGAGAGAGATGATCGGCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU243700 True 834 lncRNA 0.43 2 4506759 4543037

Neighbor

gene id symbol gene type direction distance location
CI01000050_04430129_04436139 NA coding upstream 69302 4429979 ~ 4437457 (+)
CI01000050_04406761_04429903 DISP3 coding upstream 76856 4406761 ~ 4429903 (+)
CI01000050_04303341_04330327 DNM1L coding upstream 175518 4303341 ~ 4331241 (+)
CI01000050_04281992_04287535 NA coding upstream 218957 4281992 ~ 4287802 (+)
CI01000050_04275924_04277061 NA coding upstream 229112 4275924 ~ 4277647 (+)
CI01000050_04591548_04592778 NA coding downstream 46889 4589926 ~ 4593049 (+)
CI01000050_04617015_04691858 ANTXR1A, ANTXRL, ANTXR1 coding downstream 73700 4616737 ~ 4691974 (+)
CI01000050_04700488_04701991 NA coding downstream 157307 4700344 ~ 4702040 (+)
CI01000050_04759894_04762802 NA coding downstream 216857 4759823 ~ 4763101 (+)
CI01000050_04865991_04906702 AGTPBP1 coding downstream 322869 4865906 ~ 4907415 (+)
G214796 NA non-coding upstream 32368 4451298 ~ 4474391 (+)
G214798 NA non-coding upstream 154035 4352335 ~ 4352724 (+)
G214771 NA non-coding upstream 234912 4271588 ~ 4271847 (+)
G214770 NA non-coding upstream 235249 4271265 ~ 4271510 (+)
G214767 NA non-coding upstream 239332 4267104 ~ 4267427 (+)
G214862 NA non-coding downstream 4533 4547570 ~ 4547900 (+)
G214868 NA non-coding downstream 16543 4559580 ~ 4560196 (+)
G214784 NA non-coding downstream 28794 4571831 ~ 4573556 (+)
G214875 NA non-coding downstream 45652 4588689 ~ 4589499 (+)
G214877 NA non-coding downstream 55935 4598972 ~ 4601810 (+)
G214717 NA other upstream 398479 4107582 ~ 4108280 (+)
CI01000050_03938328_03956122 RHOBTB2 other upstream 549715 3931890 ~ 3957044 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other upstream 698020 3805143 ~ 3808870 (+)
CI01000050_02852118_02864754 RNF122 other upstream 1640937 2852118 ~ 2865822 (+)
G212927 NA other upstream 1731626 2774839 ~ 2775133 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 864548 5407585 ~ 5409417 (+)
G215539 NA other downstream 1086573 5629610 ~ 5631203 (+)
G215773 NA other downstream 2118151 6661188 ~ 6665703 (+)

Expression


Co-expression Network