CI01000050_04303341_04330327 (DNM1L)


Basic Information

Item Value
gene id CI01000050_04303341_04330327
gene name DNM1L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 4303341 ~ 4331241 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_04303341_04330327.mRNA
CTGACGCCAGGTCCGTCTTTGACAGCCTGTGGTAAGGGCGCAGAAAAGCGAAACCTCAAAACATGTCGGTCTTCCAGTGACTATACGTTGTATTTCCCATATTTCCAGCATGACAAGATGGAAACTCTGATTCCCATCATTAACAGACTGCAGGAGGTTTTCCTCACACTTGGAGCCGAAATCATCCAGCTTCCTCAGATCATAGTCGTGGGATCACAGAGCAGTGGAAAGAGTTCAGTATTGGAGAGTTTGGTTGGAAGAGATTTCCTCCCCCGAGGTTCAGGAATAGTGACACGTCGCCCTCTAGTGTTACAGCTGGTGAACGTGCCCCCGCTGGAGGAGAGGCGCAAACAAGACAATGGAATCAAAGCAGAGGAATGGGGCACCTTCCTTCACTGCAAAAACCAGATTTTCACAGATTTTAATGAAATCCGGAAAGAGATTGAGGAGGAAACAGATCGCAGTACCAATAATAAGGGCATCAGTCCAGAGCCCATTTACCTGAAGATCTATTCCCCAAACGTACTCAGTCTGACGTTGGTTGACTTGCCTGGCATCACTAAGGTCCCGGTTGGTGACCAGCCTGAAGATATTGAGACTCAAGTCCAAGAGATGATTCTGTCCTACATCTCCAACCCCAACTCCCTCATCCTGTGTGTATCTCCTGCAAACTCTGACCTCGCCACATCTGATGCCCTTAAACTGGCACGAGAGGTGGATGCAGATGGTCGTAGGACGTTGCTGGTCGTGAGTAAGCTGGATTTGATGGATGCGGGGACAGATGCTCTGGAGGTGCTGCTGGGTCGTGTCATACCGGTCAGACTGGGCATTATTGGTGTGGTTAACAGGAGCCAGCATGACTTGAACACCCAAAAGAGTCTCACCGACTCCTGCAAAGATGAGCAGGCGTTTCTGCAGCGCCATTACCCGTCATTAGCCTCCCGCTGTGGCTCGCGTTACCTGGCTCGCACCCTGAGCCGACTGCTCATGCATCACATCAGGGACTGTCTCCCGGAGCTCAAGACACGAGTAACGGTGCTCGCTGCCCAGTACCAGTCCCGACTCAACAGCTACGGGCAGCCTGTGGAAGACCACAGCGCCACCTTGCTGCAGATCGTCACCAAGTTTGCCACCGACTACTGCAACACCATCGAAGGCACTGCCAGGCACATCCAGACCTCTGAATTGTGTGGAGGAGCTCGTATCTGTTATATATTCCACGAAACATTTGGAAGAACCCTGCAGTCCATTGATCCACTTGGAGGACTCACAGAGCTAGATATTCTCACAGCTATTCGAAACGCTACGGGTCCTCGGCCAGCGCTGTTTGTTCCTGAGGTCAGTTTTGAGCTGCTGGTGAAGAAACAGATCAAGAGACTGGAGGAGCCCAGCATGCGCTGCGTGGAGCTCGTACACGAGGAACTTCAGAGAATCATCCAGCACTGCTCTGCCTACAGCACACAGGAGCTTTTGCGGTTTCCCAAACTACATGATTCAATAGTGGAGGTGGTTACCAGCTTACTCAGGAAACGTCTGCCCATTACCAATGAGATGGTTCATAATCTAGTTGCAATCGAGTTGGCCTATATAAACACCAAACATCCTGATTTCACAGACGCTGCCCAAGTGTCTGCATCTGTCAACAGCCAGCAGGCAGAGGCTGGGGATGGAGGTAAGCGATGGAAGAATGAAAAGATGCCGTCGGAGGAGAAAGGCCCCGTGCCTGCATTTGGAAGCCCCACCAAAGCCATCAACCTGTTGGACACGGCCGTGCCAATATCCCGCAAACTAAGCACTCGAGAGCAGAGGGACTGTGAGGTCATCCAACGGCTCATCAAGTGCTACTTCCTGATCGTGCGCAAGAGCATCCAGGACAGTGTGCCAAAGACGGTGATGCATTTCCTGGTGAATTTTGTGAAAGAGCATTTGCAGAGTGAGCTGGTCGGTCAGCTTTACAAACAGCCTCTGCTGCAGGAACTGCTCATCGAGTCTCAGGAAACTGCTCAGCAGCGCACAGAGGTTGCACAGATGCTGGAGGTCGTCTTTAAATTCATCCCATCTAAGGCACCACCACTACAGTCATGCACATTCAGACTGTCTTTAGCAGTTTAAGATGCCATGTCAAGTTAATCGTATATCGACTTTTATAAATGAGACACCTCTTTCAATCCAATGCACTTAATAGCCGGCGTGAAAAAGCCTAGAAGCTTGGCTTTACAGTGAATATAGGGAATATGACCATCACTTAACAAGTGCTTTTAAATGTTCTGCCATATTAGAAGTGCTCTATTTTTATAGTGTGAAAAAAAAAAAAAAAAAAAACTGCTGTCTGTAAAATCATAGTACATAACAGATAGATGTCATATATCATTGAAAAGGTCTCAACTAGCAGAATACTACAATCATATCTGTTTCAGTTAGTAACCAAACTATACCAAGTATTTGTATGAAAAAGCACCACAGACACACATGTAAACAGTATACACATGCTTTTGCACCACGTTTTGGTTTGTAATTTCGTAAAACATTAGTAAACTATAGTAGATCGCATATCTTTATTTAGAGCAGGTGGTCTCGAACAAACCCAAACATAACGTAAGACAGATCATGGAGTGAGATGACATGCAGCTTGGCTAAAGCTATAGGATTTCTGGGATCCTAAAGCGTTGTGATCATGTGTTTGGATCACGTGTTTTCCAACGTCATTTGAAAGTGCAACCAATGGACACTGGATCTCGGGTATGGTGGATGGGTATAGTGTGTAGAGATGATTGATGTGTAGAGACCAGTCGGACACTGTTAATTAGCTGGGGCGCGCTTGGATTGGTTTGATCGCTTAGATTGACAGGTCTTGCTTTACCATGTGCTATAGAATAGGAGCGCACAGGTGAAACCGAAGATCACTCATCCACCAAGATATTATTACTTGTTTATTCTATGTACTTTTATTGTGGCGTTTACACAAGTAAGTAGTTCTCAGTAAAATCACTTGTTTGGAGGTTTTTTTTGGTTAATTATGTTTCAAA

Function

symbol description
dnm1l Predicted to enable GTPase activity; microtubule binding activity; and protein homodimerization activity. Predicted to be involved in mitochondrion organization and protein-containing complex assembly. Predicted to act upstream of or within peroxisome fission and rhythmic process. Predicted to be located in cytosol; mitochondrial outer membrane; and peroxisome. Predicted to be active in membrane; microtubule; and mitochondrion. Is expressed in brain. Human ortholog(s) of this gene implicated in encephalopathy due to defective mitochondrial and peroxisomal fission 1 and optic atrophy 5. Orthologous to human DNM1L (dynamin 1 like).

GO:

id name namespace
GO:0003374 dynamin family protein polymerization involved in mitochondrial fission biological_process

KEGG:

id description
K17065 DNM1L; dynamin 1-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_04303341_04330327.mRNA True 3026 mRNA 0.47 17 4303341 4331241

Neighbor

gene id symbol gene type direction distance location
CI01000050_04281992_04287535 NA coding upstream 15539 4281992 ~ 4287802 (+)
CI01000050_04275924_04277061 NA coding upstream 25694 4275924 ~ 4277647 (+)
CI01000050_04190820_04204792 BIN3 coding upstream 97418 4190820 ~ 4205923 (+)
CI01000050_04159232_04161131 NA coding upstream 142210 4159011 ~ 4161131 (+)
CI01000050_04122649_04127014 EGR3 coding upstream 176296 4122649 ~ 4127045 (+)
CI01000050_04406761_04429903 DISP3 coding downstream 75520 4406761 ~ 4429903 (+)
CI01000050_04430129_04436139 NA coding downstream 98738 4429979 ~ 4437457 (+)
CI01000050_04591548_04592778 NA coding downstream 258685 4589926 ~ 4593049 (+)
CI01000050_04617015_04691858 ANTXR1A, ANTXRL, ANTXR1 coding downstream 285496 4616737 ~ 4691974 (+)
CI01000050_04700488_04701991 NA coding downstream 369103 4700344 ~ 4702040 (+)
G214771 NA non-coding upstream 31494 4271588 ~ 4271847 (+)
G214770 NA non-coding upstream 31831 4271265 ~ 4271510 (+)
G214767 NA non-coding upstream 35914 4267104 ~ 4267427 (+)
G214754 NA non-coding upstream 36658 4266368 ~ 4266683 (+)
CI01000050_03989489_04121180 NA non-coding upstream 181963 3988257 ~ 4121393 (+)
G214798 NA non-coding downstream 21094 4352335 ~ 4352724 (+)
G214796 NA non-coding downstream 120057 4451298 ~ 4474391 (+)
G214822 NA non-coding downstream 141590 4472831 ~ 4512459 (+)
G214795 NA non-coding downstream 175518 4506759 ~ 4543037 (+)
G214787 NA non-coding downstream 177254 4508495 ~ 4508867 (+)
G214717 NA other upstream 195061 4107582 ~ 4108280 (+)
CI01000050_03938328_03956122 RHOBTB2 other upstream 346297 3931890 ~ 3957044 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other upstream 494602 3805143 ~ 3808870 (+)
CI01000050_02852118_02864754 RNF122 other upstream 1437519 2852118 ~ 2865822 (+)
G212927 NA other upstream 1528208 2774839 ~ 2775133 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 1076344 5407585 ~ 5409417 (+)
G215539 NA other downstream 1298369 5629610 ~ 5631203 (+)
G215773 NA other downstream 2329947 6661188 ~ 6665703 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036036 si:dkey-32e23.4 coding NC_007119.7 CM002892.2 50979018 ~ 51027541 (+)
rainbow trout (Oncorhynchus mykiss) G57950 LOC106573080 non-coding NC_048565.1 CM023219.2 52547739 ~ 52549229 (-)