G57950 (LOC106573080)


Basic Information

Item Value
gene id G57950
gene name LOC106573080
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52547739 ~ 52549229 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU64421
aaaaagggacgtttctttttttgttgagtttagatACAAATAGTatgcgtgcgcgcacacacacacacattaccttgAGCATGTCTGCAGCCTCATTGCGTCTCTGGGCCATGTCTTCAGACTCAGTGAGCAGGTCATCTAACAGACCTGCCTTATACAGCTGACCCACCAGCTCACTCTGCAGGCTGTCTTTCACATGGTTCACTAAGAAGTGCATCACCGCCTTGGGCACGCTGTCCTGGATGTTTTTCCTGACGATGAGGAAGTAGGACTTGATGAGTCTCTCGATGACCTCACAGTCCCTCTGCTCTCGAGAAGACAGCTTCCTGGAAACGGGAACAGGCACATCCAGCAGGTTGACTGCATGGCCCCTCTGAGGGCTGGCAGGGTTGGAGGTCTGGAGCATGGATCTATCTCCACCCATCCCCTCATCTCCCTTCTTCAGCATGCCCCTCCAGTTCCCTGTCCCTCCATCCTGATCCCCCTGGGGACCCCCACCTGCAGCCTAGAGACAAGGAAATAGACAGACTGGTTAGAGATCCTGTCTAGTGGTTTATTCAATGGTAAggattcatcctttacttatacAGTTGTCTCCTTGAGATTAAAAATCTATTTTTACAAGAGAGAACTGTTCCAAGACCGCAACAAT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64421 True 652 lncRNA 0.50 3 52547739 52549229

Neighbor

gene id symbol gene type direction distance location
LOC118964321 NA coding downstream 43976 52499339 ~ 52503763 (-)
LOC110532407 NA coding downstream 85617 52459257 ~ 52462122 (-)
LOC110524680 LOC106573083 coding downstream 99439 52333895 ~ 52448300 (-)
LOC110524655 LOC106573085 coding downstream 226144 52206796 ~ 52321595 (-)
LOC118966705 LOC106573087 coding downstream 350534 52192622 ~ 52197205 (-)
LOC110524730 LOC106573078 coding upstream 15793 52565022 ~ 52621034 (-)
LOC110524766 pmge coding upstream 75128 52624357 ~ 52636698 (-)
LOC110524780 LOC106573150 coding upstream 95720 52644949 ~ 52654488 (-)
LOC118964326 NA coding upstream 132660 52681889 ~ 52682613 (-)
LOC110524838 LOC106573075 coding upstream 195088 52744317 ~ 52753305 (-)
G57917 LOC106573080 non-coding downstream 7682 52538346 ~ 52540057 (-)
G57741 NA non-coding downstream 52273 52495173 ~ 52495466 (-)
G57730 NA non-coding downstream 63512 52483952 ~ 52484227 (-)
G57717 NA non-coding downstream 67956 52479566 ~ 52479783 (-)
G57715 NA non-coding downstream 68437 52479076 ~ 52479302 (-)
G58040 NA non-coding upstream 154608 52703837 ~ 52755442 (-)
G58010 NA non-coding upstream 171843 52721072 ~ 52722815 (-)
G58050 NA non-coding upstream 174533 52723762 ~ 52724121 (-)
G58059 NA non-coding upstream 184859 52734088 ~ 52739028 (-)
G57742 NA other downstream 51505 52495898 ~ 52496234 (-)
G56764 NA other downstream 800519 51746617 ~ 51747220 (-)
G56372 NA other downstream 1143396 51400727 ~ 51412569 (-)
LOC110524514 borcs5 other downstream 1755670 50777716 ~ 50792069 (-)
G55627 NA other downstream 1780308 50765363 ~ 50767431 (-)
G58565 LOC106561659 other upstream 590229 53139458 ~ 53140304 (-)
LOC110525078 LOC105021811 other upstream 785495 53334724 ~ 53338484 (-)
G58718 LOC100194703 other upstream 876735 53425964 ~ 53426316 (-)
G58842 NA other upstream 1039193 53588422 ~ 53588770 (-)
LOC110525178 LOC106581842 other upstream 1212726 53761612 ~ 53774544 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_04303341_04330327 DNM1L coding CI01000050 null 4303341 ~ 4331241 (+)