G56372


Basic Information

Item Value
gene id G56372
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51400727 ~ 51412569 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU62721
gctttgtggtgtgtgtgacgaGGCTGGCGTGTGCGCTTGTGTGCGTACTCACGGGATACCGATTTCAAATAAATTGTTCTGGATGAGTTGCTTTCCCAACATGGTGATACTGAGCTGAATACACAACTCCATCAGACATCCTCCATGAGCACACTCTTCCATGCGGTACGACTCAAACACATACAGATAACTTCCAGGTCGTCCAACAAGCCTGCCTCTGAAGAATGCTATGTATATGATGGGAGTAAAGGCATTCACAAACTTTAGGACGAACGTCTTGAATATCAACCTCTCCTCAAAGCTCCTGTCTGTCTTTGGGACCTCGAGGACAGTGAGCCAGCGGGCCACGGCTCCGTAGACCTCGTCCAGGATCAGAATGACCACCAGGTTGATGATTGCGGCCGTTGTTTTTACCATCAGACGGACGTTGGATCGCGTCGTGGGGTTGTTGCTCATGTGCAGCGCTGCCGTGATGGAGATCCGGTAGAGGATGACCCCGAACACTATAGCAAAGGTCACCCCGATCATCAGAAGCATCATGACTATGTTGGTCATGTATGCCGGTAACCGGTCTCTGCAGGTCAGCTTTTCTTTTTCAGTCTAAAAGAGGGGAGAAAATATTCAGATCTATAGGAGGTGCAGCCAAGTCTACTGTTACTGTTTGCACGTGGAAAACATCGCAGCCAGTCAGCAGAAGAATCCAAACAgcaatggaggaggagaggagagaggagaaaagctgGTGTTTTGATGCGGACAAACCATTACGCCGAAATAAACGTTTCAAACTGAATTATTCAAGCCTGGAAGTCAAGATGACAGTGTTCCAGCAGTTTATTCACTGTATTTCAAGCATTTAGTCATTCATCGTTCTCATCATTCCATTCTCTATGCAGCAAATCTCAGGCAGAACATGACTAGTGTctaaaatggcaccttattccctacatacagtagtgcactattttcgaccagagccctgtaACAAGCCCTAC
>TU62722
AAAAATTATAAtcccaaattcaaactacaggtCGCAGAGCAAAATATCGCACGCCAAATTGGTCGCACTTTTAAAGCCTTGGGTCATATGGTAAGGAAAAACTCAAGGGACCGAAGAATCCCAAAGACAACAAGTGTTTTTTTCCCTTCTTTGTAAATCACTTCTATTGGAGTGACTTCAATATTATGTTTAAGGAATCAATATAGGAGTGTAATAAAAAAACGAACCTGTGTGCAGACAGAGTTTGAACAGTAAACCCACCAATGTCTTTTGCCCTCGCAGCGACCGGCCTCCTGAGCTCAGCCACAAACTTCTTGGCATCCAGGCGTATCTCGATGATGTTGTTGAGCAGGGCGAACAGTGGGGCCAGCGGAAACGACGCCACGAACAAGGTCACAAACCCAAACTGGATTATCATCTCCATGTACTCTGGAGTGAGGCCTGCGAAGGGCTCTAGGAAGTGGTCCGTCTCATAGCGCTGtaacttcttctccctctcctcttcctggaAGGACCTTCTCTTAGACTTGATGTACCTGATCAACTTCTTCAGCTTCGGGATACCGATTTCAAATAAATTGTTCTGGATGAGTTGCTTTCCCAACATGGTGATACTGAGCTGAATACACAACTCCATCAGACATCCTCCATGAGCACACTCTTCCATGCGGTACGACTCAAACACATACAGATAACTTCCAGGTCGTCCAACAAGCCTGCCTCTGAAGAATGCTATGTATATGATGGGAGTAAAGGCATTCACAAACTTTAGGACGAACGTCTTGAATATCAACCTCTCCTCAAAGCTCCTGTCTGTCTTTGGGACCTCGAGGACAGTGAGCCAGCGGGCCACGGCTCCGTAGACCTCGTCCAGGATCAGAATGACCACCAGGTTGATGATTGCGGCCGTTGTTTTTACCATCAGACGGACGTTGGATCGCGTCGTGGGGTTGTTGCTCATGTGCAGCGCTGCCGTGATGGAGATCCGGTAGAGGATGACCCCGAACACTATAGCAAAGGTCACCCCGATCTGGAAAGAGGTGACAGGGATAAGGCCTCCCGGCAAAGGTCAATACTGGTAGGTTTGGTTTTGAGAATCTTTTCCAGCGTGCCGTCAAACGCTTAGGTACTGTATCATCTGTTACACAGTTTAGGAATTGTAGGTCTAAACCCTTGGATTAAAATATTTACTAAGCTAACGTATGGAATTCTTTTAAGATGCTAATAAAAT

Function

NR:

description
anoctamin-1-like isoform X8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62721 False 995 TUCP 0.57 5 51400727 51404343
TU62722 True 1231 lncRNA 0.45 6 51402108 51412569

Neighbor

gene id symbol gene type direction distance location
zgc:101566 LOC106573100 coding downstream 257363 51041431 ~ 51144745 (-)
LOC110532401 NA coding downstream 410710 50897530 ~ 50991398 (-)
mapk8ip1a LOC106573101 coding downstream 513612 50871475 ~ 50888496 (-)
LOC110532393 ckap5 coding downstream 551440 50808713 ~ 50850668 (-)
LOC110524514 borcs5 coding downstream 617069 50777716 ~ 50792069 (-)
LOC110524590 ccnd1 coding upstream 66477 51479046 ~ 51491719 (-)
LOC110524599 NA coding upstream 260984 51601527 ~ 51674973 (-)
LOC110524618 LOC106573092 coding upstream 438413 51850982 ~ 51886676 (-)
LOC110524646 LOC106573087 coding upstream 579868 51992437 ~ 52100196 (-)
LOC118966705 LOC106573087 coding upstream 780053 52192622 ~ 52197205 (-)
G56326 LOC106573098 non-coding downstream 59863 51336644 ~ 51342245 (-)
G56271 NA non-coding downstream 148244 51253568 ~ 51253864 (-)
G56270 NA non-coding downstream 149000 51252885 ~ 51253108 (-)
G56148 NA non-coding downstream 168667 51231723 ~ 51233441 (-)
G56122 NA non-coding downstream 195314 51206559 ~ 51206794 (-)
G56391 NA non-coding upstream 12116 51424685 ~ 51424920 (-)
G56405 NA non-coding upstream 22435 51435004 ~ 51435208 (-)
G56427 fgf3 non-coding upstream 38062 51450631 ~ 51451203 (-)
G56429 NA non-coding upstream 39196 51451765 ~ 51452082 (-)
G56446 NA non-coding upstream 53947 51466516 ~ 51466741 (-)
G55627 NA other downstream 634677 50765363 ~ 50767431 (-)
G55408 NA other downstream 989980 50411634 ~ 50412128 (-)
LOC110532382 LOC106573120 other downstream 2416191 48971580 ~ 49044257 (-)
LOC110524264 LOC106573263 other downstream 3097972 48291626 ~ 48304829 (-)
G56764 NA other upstream 334048 51746617 ~ 51747220 (-)
G57742 NA other upstream 1083329 52495898 ~ 52496234 (-)
G58565 LOC106561659 other upstream 1726889 53139458 ~ 53140304 (-)
LOC110525078 LOC105021811 other upstream 1922155 53334724 ~ 53338484 (-)
G58718 LOC100194703 other upstream 2013395 53425964 ~ 53426316 (-)

Expression


Co-expression Network