G56326 (LOC106573098)


Basic Information

Item Value
gene id G56326
gene name LOC106573098
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51336644 ~ 51342245 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU62674
AATACTTATGTTCCTTTGATCGCGATAATATGAATTTCTCTCTAAAGTAAATGAATTATTTGTCGCATAAAATTACAGCAACATATATAGCATGAAAAGGACGTTGACAAAAAGCAGAGTGATTCTGTATCTATGAAGAATAAAACAAGAGGACATAACGTTTGGAGCTGATGCCTGTCGGTTTACGGCATCTTAACATGTCCAATGTAGCCAGACTGCATTGTACTACATTTCACCATTGTTTCCCAGTGGAGTGAAATAAACCTGAAATAAAGCAGAATTCAGTCTGGATTGCTATGCTATGTTCCATTGACAGCATACTACGGTGGCCCTACAGGGCAAAGTAAGGAAAAGTAGCTTTTAAAATGAGCTTCAGATGCCTTATTAAGTATATAGGTCTAGTCAGCTTCACTActaggcctttaggcctgtacaTGACCTCAGTGCAACGTGCAGCCGTCAACTCTACTGTACATCAAATGTCACATTCAAGTGGTGTGATTTTCTCTCGGTCATATAGTGGTCATATAACGCTTTCTATAGCAAATAGTGTCGAAATGTACAGCCTGAGAATCTTCATTTATACACACGTGATGCAAAAAACTATGCAAATTAGTTTATATCAGCTTTTAATAATTACAGAGGCTTTGTAAATGCATGACTATCAATTGCTAAAAGTTTCAAATATGCTCTATAGGAATATGGATTATAACACAATTATTTATATCAATTTTAAAAATAGAGAGACTTGAAATCCTGTTACATGTATAATTATCCCCCTGGAAAAGAATAAGAAAAACAACAACTTGAAACAGAATTTATATTATATTGCTTCTTAACCATATTTCTCTTCTTTTTGGAAAACCTAACCACAGCTCAGGGTTGATATGGCAACAACACGGATAGGAATACATCCTAACATTAAATATCTCTGCGTAATCAAAAAAATACTGTACTCTTTCTTGTTCCTATGGTTCTTAACATAAGATCTCATCTCAACGTGTGCCCGCGTGTCAACAGTGACAACTGACAGGTGACAAGTACCCCTCTACAGCCTATCGCACTGGAACTTTTCTGTTATGAGGTCATACTACAGTCATCGGACAGTCGTAGATGAATACCGTACACATTAAGTATGCTTTAGGCAACATCCTTTTGATTGCGGACCATCacactttttaaaaactttttttgttttacaaaGTCATCAGAcagtcatcagtcatcagtcCCCCCCCCCGGGATGTCAATCCAAAAGAATGTTTCGTAAATACTGATGTTAGAATTTTAGCTAGCACcctcatttttttggggggggggagggggtttCAATATCAAGAAGTTTACACTGCAAACTGAGTGGAAAATACCACCTCAGACCGTTTCAGTAAGTAAAAACAGTGGAGAGagtaaattacatttaaactcatcaACATTACGATGAGCGAATCCCTGCCCTTTTGGACTGGCGATGGTATGAGGAGACTTTGCCTTGAGAACACGGAGGGAAATGATGCTGCACTTCAGGACATTCTTATTCTGGTGATACTGTTTTGGATTTGGCCAGTTTCAGACGTGTTGTATAAAAGAGACCTGTCAAAGAAGTCCAATGGCACATGGTTTAGCAAATGTCCTGTGGCTCCCATATGTTCCAGAACAGCAGTCACTGGGAGTAAAAATCCCCCCTAAAAGCATCACCTAATTCTAAAAAGAAGCATGTTGAGCTCTGTGGGTATCTACAACTTTCTTCCTCATCAACGAAACACATCAAAACACCATCATAGAATAAATACTATCTCTAATACTTCAATAATCATACAACATTTCTAGCAACTTGATTCTTAGAGGTATCTGCCTCTCTTCGATTGCCAAACAAGTTGAACTATTCCTATTCTAGGGGAAGGGGAAAAGGAAATTCCAGCTTTAGTGTTTGTTCGCCTACTTTTTCTCATCGTTGCATAAACGTGACTGATGTTCGTCTTCAGAAACATGCCTATTCTGCAGTGTTGGTTTAAATTCCTTttaaattcaggaagtaaacggACATTCTCTTCAATGCTTCTCTATGAGAAAAATGTAGAATTGGAATTTCactttacttcctgaattgaaatgaaaTGGACCCCATCCCTGCTACTCTGTTGAACTAGGGTAATCCATTCCTGAGTCTTCAATCCCAAAGCCGTAAACATCAGTTCAGGGTATAGTAATAACCTAATGTGATAATGTGTGTATTATTCCTCTCAGAGGACATAGAAGACTGCGAAAGAAAGGATGATGGTTGGTGATAACGATTGGAAAGCCCTGACTGCCaagctctgctctctctgccaTGTCATGTTCAGGAGACAACAGTAGGGAGAGCTGTTGGCACACATTTCAGCTTCCTGTGGAAGACAGTATAATGATTTATAAACTGAATTTACATTTTCAATATGTATTGTGTTCCACTTTCCATCCTCAAGTAAAACATAACTACAAACAAATATTAAAACTTGAAAGTATGTTGAAAACATGGCAAGTGAAATCTAAGGGCAACAACTTGCTACTGTACCTATTTTGTAATCCATCTGATGTGATCTCCCtttcaggagtagaaatgtgcAATACCTTCGTCTGAGAAAACACTGCACTGTCCCTCAAATCAAACTACATCCCggtaaaaagggagagagagaaaaatgaatTACACACACTGCAGGGCCATGGCCGGAGTTATGGGCAATTGCCATGGCCCGCCCCCTAAGCCCTATTGAGTAACACAGTACAAGTCATAAAACCAGGAAATGGTTGAAATCATTTTTTGTCACCATTAATTTTTGTGTCTGGGATTTTAGAACTACTTCGTATAAGCCGCGCAAATCTCTCCGGACAAGTAAATGTTTCTCAATAACTAGCTTTTCACATTGATTATATTAAATTATTAATATATTGATAAAACTCACCTTGTCCGTGGGGGAATTACACAGCTTTTATGGGTATTATAACGCGTCCACTGTGGCGTATAATTTATTTGACCGAGACGCGCGCCGACATAAAGACAGCATCAATCTCAGATAAAGCATCCGAgagagcgaaacagcgccccctctgtctcagtaggtGCAGTCCACGTATGTGACGGTGTCTGGAATTAAAGAGCATGGCATGTCATTCTCTCTGTTTTTTGTTGCCAGATctcatcagatacatgggctacatagAGTAAGACAGAGGAGCGCTGTCTCGCTCACTCGGATGCTTTTTTGGGACGAATGCACGAAGGTAACCTATCTCTTGAAGTGATTTGCTGGACAATcggatgaaaacatcatgactggttatgttcatgccacattaaaaggtCATACATTTTTACAGCTAAATGTCTTTACCATAAAAACCCACACAAGCACCGCTAAAGCGGTCATTTGGACTGCCCATTCATTTAAAACATGCACTACTCCCCTTTCGTCCTTGACCtttcctaaataagtctataAATCACACTGTTGTTGTTAGAATCAAACAGAACCAGTTttatcatgtttttttttctccccaattgccTACTGCCCtgccgacagtagggcctgctccccttcTTCTCATGATAGTGCCATGCCCAGTTGATAACCACCCCGATAACGGTCTCGAATCTGAACCTAAACTATActgaaactaatttcacacatacaaCAGATTCAATAAACGAAGTAAAGCACGATGTGgggaatgggtgagttgatgagcgaGGGGAAGCGaacaatacatcattatataatcaccaattgtgaatgaagaacagtGCGGAACATTCtattgtattgatctattctaaTTATAACCTCAAAATAGTATGTACCCTATATCAGTTCACCGAAACCAAGCAGTCTTTTCAGTCCTAGTCTGGCCTACTTGGAGTAAACAGCGAGAGCGTGCGTAATGTAAAATGGCAAGCGTTGCTACAAAATCTGAATGGAAAACGATTCAGATGGCAGGGAAAAAATGAATCACGATGAAATCTCTGATGATTATTCTTCTGATTCTGAGCCTCAGGCTGAATCTACACCTCCGAGGCGTAAAGGCCAAAAAAAAAGCCAGAATGGTGCACACTGAGCAGGTGCCTGCGCCACCAACAAGTGAaagggtgagacaggagagaggaagggatggcaCCGCTTGGAAAAGAACAAGCCGGTGACAATGCTACAGGCCAAATAGCAGCACAAAATGTCGTCACTGAAAGAGCAGGGCTCAAGCGCTGTCGTTGTTTATATGAGGTGGACATTCTCCAACTGATAATTGACCATTTCTTACGGCTGTCATCGACACTTGCTGTATATCCATTGTAAAATGCCATTATTGCTTTGTGATGATTTCCACTGTTTATCAAGCACACTTGGCGCTTATatgtttaggctactgatgttttGGTGGTTGGGGTGCGTTTTATTTTGTTGTCATAAAAAGGAAGCTGTTACCGCGTTCCCACACCTATGCTTTCTGTTTCATAGTTGTAACAAAGGCACTCCACGAATACAATTTATTGAACACTTGAAtttggatgtttttttttgtcgTCGTGTTTTTCAGCTTTTTACATACTGTATCCCACAGTAACATAAACGCATGAAAATGCTCGTGTTTTTTGAAACATATTTGTTGTATTCTAATGTTACTTAAGATAAACACAAGCCAAATTATTATTTTGGAAATAGCATATATTAAATGAATGCTCAATTTAGcttgagggggggaggggggtacctTGAGGCCAAGCACTTACACACATAGGAGGTCCCGTAAAAAAAAATGTGCCCGGCCAACTGATTGGTTCTAGTGCCGGCCCTGTGCAGTGCAGATTCCCACCCTTTTTCCTGAAGAGATCAGTGTTCACATACTTTCTAACAGAGATACAATAGAAAATGAAACCCCTGCAGAGCTGACTCTGGTTTTGCATTCAAATGGGGTTGATTTCAAAAGTCCTTAAGTCTCGTAGTGATTAGGCTGCCGTTCTGTTTGATAGTGTAGTGTATTTCACATCGCAGCCAGGTCCCTGTGTGTCTGCTTCCTTACTTTCTACTGACAGAGCGGCTGTGTCTCACCTGGGATCACTCTATCCCACCCTGGGGGACTTTTGTGCTTATTCAGGAAACTGCAGTGCTGTTTCAAGTTGCAGTTTCTTCAGGATACATGAGGATATTTCTAAGTTTCAACAAAACAAGCATCGTCATAAGAATTATACAGTAAGTATAGTTTGAAATAAGTCAACGTAAATAAAACTATTATGTGAAGTTGTCGTGTTGGAGACTGAGAGacctctatcctctcttctcatctgtcCATCAGCAGTTTCAAAGCTCTCTCTATGTTCATCCGATGGCCGACTCTGGTCACCCCGAGATCTATGAGGTCGTCCTTCTGCAGGCTGGGCAGATGGGAGCCCTCGATGTCGTTGTCCATGAAGGTGTCTCTGTGCTCTGCCAGGTTTAGGCTCTCCAACCAGTCGGCCACATCGTGCTTGCTCCACATCAGAACCGGCTTGGTGGCAAAAGGCTTGTTGGAGACGGCCTGCAtgagggtgagagggga

Function

NR:

description
PREDICTED: SH3 and multiple ankyrin repeat domains protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62674 True 5574 lncRNA 0.43 2 51336644 51342245

Neighbor

gene id symbol gene type direction distance location
zgc:101566 LOC106573100 coding downstream 191899 51041431 ~ 51144745 (-)
LOC110532401 NA coding downstream 345246 50897530 ~ 50991398 (-)
mapk8ip1a LOC106573101 coding downstream 448148 50871475 ~ 50888496 (-)
LOC110532393 ckap5 coding downstream 485976 50808713 ~ 50850668 (-)
LOC110524514 borcs5 coding downstream 551605 50777716 ~ 50792069 (-)
LOC110524590 ccnd1 coding upstream 136801 51479046 ~ 51491719 (-)
LOC110524599 NA coding upstream 331308 51601527 ~ 51674973 (-)
LOC110524618 LOC106573092 coding upstream 508737 51850982 ~ 51886676 (-)
LOC110524646 LOC106573087 coding upstream 650192 51992437 ~ 52100196 (-)
LOC118966705 LOC106573087 coding upstream 850377 52192622 ~ 52197205 (-)
G56271 NA non-coding downstream 82780 51253568 ~ 51253864 (-)
G56270 NA non-coding downstream 83536 51252885 ~ 51253108 (-)
G56148 NA non-coding downstream 103203 51231723 ~ 51233441 (-)
G56122 NA non-coding downstream 129850 51206559 ~ 51206794 (-)
G56372 NA non-coding upstream 59863 51400727 ~ 51412569 (-)
G56391 NA non-coding upstream 82440 51424685 ~ 51424920 (-)
G56405 NA non-coding upstream 92759 51435004 ~ 51435208 (-)
G56427 fgf3 non-coding upstream 108386 51450631 ~ 51451203 (-)
G56429 NA non-coding upstream 109520 51451765 ~ 51452082 (-)
G55627 NA other downstream 569213 50765363 ~ 50767431 (-)
G55408 NA other downstream 924516 50411634 ~ 50412128 (-)
LOC110532382 LOC106573120 other downstream 2350727 48971580 ~ 49044257 (-)
LOC110524264 LOC106573263 other downstream 3032508 48291626 ~ 48304829 (-)
G56764 NA other upstream 404372 51746617 ~ 51747220 (-)
G57742 NA other upstream 1153653 52495898 ~ 52496234 (-)
G58565 LOC106561659 other upstream 1797213 53139458 ~ 53140304 (-)
LOC110525078 LOC105021811 other upstream 1992479 53334724 ~ 53338484 (-)

Expression


Co-expression Network