G56427 (fgf3)


Basic Information

Item Value
gene id G56427
gene name fgf3
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51450631 ~ 51451203 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU62780
CCACTTTATTCACAAGACAGTATGATGCATGCAATCTCTATATAAGGTTGTACATTATTCCAACAGTATCATTATGCCAGTTTAAAGGAGGGAAAGGCGTCCTGGTATCTCTCAGTATCTCTCAGTCACCAGgtaggtagtcaGGCTTTGGGCAGTGTGGAATGACATGAGTCAGACTAGTCATCAAACTGCCTGGATATGGAAACATGTCTCTGTCTCCGTGGCCCTGTCTTTCCTGCAAGTCTGAGGGCAGTCTGTCTGTACCCGAGACTACTGTTGAACAACAGGTGAACCATGTCATGGTCCTTGTGGCCAAGGACCCTGGGCAGGAAGAGGGAGGCCTTCTCTGTCCTGCGAGTCTTCAGGCCACGCTTTGGCCGGCCCTTTCCATTGATTGACACGTACCAGAGCCTCTCAGCGCTCGCCCTTCGCCTGCTGCTGCTTCCTGttgaggtggagggaggggttgtcTGGTAGTTGCGAGAGGCGTACGTGTTGTAGCCTAACTCATGGATCCGCTCCATGAACTCACACTCCTGGTTGAAGGCAGC

Function

symbol description
fgf3 Enables fibroblast growth factor receptor binding activity. Acts upstream of with a negative effect on Wnt signaling pathway. Acts upstream of or within with a positive effect on hypothalamus development. Acts upstream of or within several processes, including animal organ development; nervous system development; and regionalization. Located in extracellular matrix and extracellular space. Is expressed in several structures, including germ ring; mesoderm; nervous system; neural rod; and pharynx. Orthologous to human FGF3 (fibroblast growth factor 3).

NR:

description
fibroblast growth factor 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62780 True 551 lncRNA 0.52 2 51450631 51451203

Neighbor

gene id symbol gene type direction distance location
zgc:101566 LOC106573100 coding downstream 305886 51041431 ~ 51144745 (-)
LOC110532401 NA coding downstream 459233 50897530 ~ 50991398 (-)
mapk8ip1a LOC106573101 coding downstream 562135 50871475 ~ 50888496 (-)
LOC110532393 ckap5 coding downstream 599963 50808713 ~ 50850668 (-)
LOC110524514 borcs5 coding downstream 665592 50777716 ~ 50792069 (-)
LOC110524590 ccnd1 coding upstream 27843 51479046 ~ 51491719 (-)
LOC110524599 NA coding upstream 222350 51601527 ~ 51674973 (-)
LOC110524618 LOC106573092 coding upstream 399779 51850982 ~ 51886676 (-)
LOC110524646 LOC106573087 coding upstream 541234 51992437 ~ 52100196 (-)
LOC118966705 LOC106573087 coding upstream 741419 52192622 ~ 52197205 (-)
G56405 NA non-coding downstream 15423 51435004 ~ 51435208 (-)
G56391 NA non-coding downstream 25711 51424685 ~ 51424920 (-)
G56372 NA non-coding downstream 38062 51400727 ~ 51412569 (-)
G56326 LOC106573098 non-coding downstream 108386 51336644 ~ 51342245 (-)
G56271 NA non-coding downstream 196767 51253568 ~ 51253864 (-)
G56429 NA non-coding upstream 562 51451765 ~ 51452082 (-)
G56446 NA non-coding upstream 15313 51466516 ~ 51466741 (-)
G56766 NA non-coding upstream 232733 51683936 ~ 51694900 (-)
G56834 NA non-coding upstream 312972 51764175 ~ 51764498 (-)
G55627 NA other downstream 683200 50765363 ~ 50767431 (-)
G55408 NA other downstream 1038503 50411634 ~ 50412128 (-)
LOC110532382 LOC106573120 other downstream 2464714 48971580 ~ 49044257 (-)
G56764 NA other upstream 295414 51746617 ~ 51747220 (-)
G57742 NA other upstream 1044695 52495898 ~ 52496234 (-)
G58565 LOC106561659 other upstream 1688255 53139458 ~ 53140304 (-)
LOC110525078 LOC105021811 other upstream 1883521 53334724 ~ 53338484 (-)
G58718 LOC100194703 other upstream 1974761 53425964 ~ 53426316 (-)

Expression


Co-expression Network