LOC110524655 (LOC106573085)


Basic Information

Item Value
gene id LOC110524655
gene name LOC106573085
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52206796 ~ 52321595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604512.2
GAAATTCCAACACGCTGATATTCTTGACGCTTCCAAACAGAGGAGTCTACAGCCATGACTTAGGGCGAAGCTACTGTGGTGCTGACTGAAAAGCAGCCTGTCCTGCTAATGTTTCGTCATCAGCCGTGGTTCTAAGCATCACCTCAGGGGGTTCTACACAGAGCAACATGCTGCACCTCACTGtgctcctccttttcctcctgtCCCTCACTTTCCCCTCCACGGATGCATCTGTCTTCGGAGGGGAACCTGGTTTCTACGGAGACGATGCTACAGGTTACGGTCCGGTGTTTGAGGATCAGCCGGTCGAAACCATCTACCCCGAGGAGTCGCCTGAGGCCAAAATCACCATGAGCTGTCGAGCACGAGCCAACCCACCTGCCACATACCAGTGGAGGTTGAACAGCCGGAGCATAGACCTGGATGGTGATAACCATTACACTCAGGTCGGGGGCGACCTGGTCATCTCTAACCCCATCAAGAACAAACACGTTGGGAACTACTCCTGTGTGGCCACCAACGACTACGGCACTGTGGTCAGCCGAGAGGCTGGCGTCCGGTTTGGATacctGGACTTCTTCTCATCTGAGGAAAGAGAGGCGGTGCACGTGAAGGAGGGCCAGGGGGCAGTCCTGCTCTGCGCTCCCCCACCACACTACCCACACGAGCTGTCATTCCGCTGGATTCTGAACGAGTTCCCTATCTTCATCACGCTGGATAAACGTCGCTTTGTCTCCCAGACTACAGGGAACCTCTACATCTCAAAGGTGGATTTATCAGACAGTGGCAACTACTCCTGCTTCGTCTCCAGTGCCTCCATCGCCAAGAGCGTCTTCAGCAAGTTCATCCCCCTCGTCCCCCTGACTGAACGTCCAATCAGGAAATACCCCGCTGACATCAAAGTCAAGTTCCCAGACACTTACGCACTGGTGGGACAGAATGTCACAATGGAATGCTTCGCCCTGGGAAAccccatccctcagatCCGCTGGAAGAAGATGAACGGAGAGCTGCCGTCCAATCACGACGTCAGCATGGCGGGGGCCCACCTCCACCTGTACAACGTGCAGTATGAGGACGAGGGGACATACGAGTGTGAGGCCCTCAACTCCAAAGGAAAGGACTGGCACAGGGCACGCGTCTCTGTAGAAGCATTCCCGGAGTGGACCGAGTCCATCAACAGTACAGAGAAGGACATCAGTAGTGACTACACCATGTCCTGTGTGGCTAGCGGCAAGCCCAAACCCCACGTACAGTGGCTCAAGAACAGCTATGCCTACGATAAGCGTGATTTGAGGTTCAGTGCTCTGACGTTTAAGGACTCTGGGATGTACCAGTGTATAGCAGAGAATCGCCATGGAGTCATCTATGCTAACGCAGAGCTGCGAGTGATTGCGTGCGCCCCTACGTTTGAGCACAACCCTGTGAAGTGGAGGATTCTGGGAGCTAAGAACGGCAGAGTGGTCATAGAGTGTAAACCTAAAGCAGCTCCCAAACCCTCGTTCTCCTGGAGCAAGGGCACTGAACTGCTCTTCAACTCTACCAGGGTGTTAATCTGGGAGGATGGTAGTCTGGAAATTCTGAATGTGACCGAAGCAGACGAGGGGCGTTACACCTGCTTTGCTGAGAACAATCGGGGCAAGGCCAACAGCACAGGCTCCCTCTCCATCACAGAGGCCACTAAGATCACCTTGGCTCCTTCCAACGCAGACGTGACGGTGGGGGAGAGTACCCACATGCAGTGTGCCGCGTCACATGACTCCACGCTGGACATCACATTCGTCTGGACCCTGGACGCCCACTCCATCGACTTCGACCGGGAGGGATCCCACTATGAACGCAACCTGAATGGTGGTTCCAGTGGAGAGCTGCTCATTAAGAACACCCAGCTGAAGCATTCTGGACGTTACACCTGCACCGCCCAGACCCCTGTGGACAACGTCACCGCATCCGCCAATCTGGTAGTCAGAGgTCCGCCTGGGTCTCCAGGTGGGGTGCGCGTGGAGGAGATCAGGGATAAGAGTGTGCGTCTGATCTGGAGCCGAGGTACAGACAACCACAGCCCCATCTCTAAATACACTATCCAGTGCCGGGACTCGTTCTCTCAGGAGGACTGGCGAGACGCCACCACATccCCTCCAGATGTGGAAGGAAATGCAGAGTCGGCCACGGTGGTGGACTTGTTTCCCTGGACAGAGTATGAGTTCAGGGTGATAGCCACCAACACCCTGGGGACAGGAGACCCCAGCAGCCCCTCTCCCAAAGTCACTACGCTGGAGGCAGTTCCTGTGGTGGCGCCCTCAGACATCGGCGGCGGCGGCGGGACCAGCAGGGAGCTGACCATAACTTGGACGCCAGTGCAGCCACAGTACTACTATGGACGTAACTTTGGCTACATCATCGCCTTTAAGCCCCGGGATGGCTACGAGTGGAGGAAGGTGACTGTGGCAGACCCCGGGGCTAAACACTACGTCCACAAAGACCCGTCCATCCTCGCCTCCACAGAGTTTGAGGTCAAAGTGAAGGCCTTCAACAGCAAAGGGGAAGGACCCTATAGTCTCATGGCTGTCATCTACTCTGCGCAGGACGTGCCATCTAAAGCCCCGACTAGTGTGGGGGCCAGGGCGCTGTCCGCCACTGAGGCCATCGTGTGGTGGCTTCCTGTCACCCAGCACACTGTAGAAGGCTACCAGGTGCGGTACTGGAGGAAGGCGGAGGACAGCGAGACGTCCAGTCAGAGGGTGGTGGTGTCCAGCAGAGAGAACCAGACCAGGCTGGATAACATGAGGCCAGACTCCCACTACCTCATAGAGGTCAAGGCCTACAATGCAGCCGGATACGGACCCCCCAGCCAACACTTACAGATCTACACCAAGAAAGCCCCCCCAAGCCGGCCTCCTAAAATAATCAGTAAAAAGCTGAAAGGCACATCAGTGAATATCGCCTGGGAACATGTTGAGCCCTTGGCCAACGAGTCAACAATAGATGGCTACAAGGTCCTGTACAGGCAGGCCAGCAAATCCACTGGGATGCTGTTTACCACTGGGAAGCGGTCCATAGACCTGCCCATGCACAAGGATGGGGACTACATAGTGGAGGTCAGGGCTCACAGCGAGGGAGGGGACGGGGCTGTGGCCCAAATACGCATCTCAGgtGGAGGCATCATGGCTGCCAAGTCCCTCAGCTTGGCCTCCCTGCTTCTGGTGGCTCTGCTCTGCCTGATGGGCCTCTGAATGTAGCGCCATCTTTCTCTGTCTTCACTGTCCAGTCCAGTGAAGGAGACTCTGTGAAGTTGACGCCTATCTATGACAACTTTGGTTTCCACAACCTTTGGTTTCACCTTGCAGgccaaaaaaaaacatattcccCGTTTCGAGGAATTAAGGCTCTGTTTGTGGGGAAAAAGACACAATACAAAATTTGGACAGAGAAGATATCTGGGATCTCTCTTATTTTAAACCTACATTATCGTTGAAGGAGGAGTGTCTAAAGGGGGTGTTTCAACTTTTTCAATATGCCTTATATGTGAACGGTTACACTTATCTTTCACAATGCCATGACTGGCTCTTGACTGGGTGAGGTGTTAGTGCATAGGTACTGCACCAAGATGGCAggtaactgtttaaaaaaaatattgtgatTACAGGCCTTTCTTGTTCATTCATGAAGGTACAGTAGCTTCAAAGTGTGTGTTTCATTTGATGTATGGCATTATGGGCAATTGTTACAACATAGCATtccatatatagtgtatatatatatatataagcttAGCAGGTAATATAGTTGTGAAGGATAAGTGTATGAGTTTCTGAAAATGTCTTTGTGTTTTATATGCATTTCAGTGACTTTTTCTTCCccctttttcttttcttttttcaaGATGAATTACACCATCCCCTTTACAGAGatacagtcaaatcaaatcttGGTCCCCGGCATCCTACGATTTCTCTTATCGAACATCATCAGACAAAAGAGCAATTCATGtaatactaatataatatatgcaaTGTATATGGTTCTGCTATCTTAATAAGTACATATAGCCAGTACATATAGCTTACTATTAACGCTGTAACTTCTTTGTTCAGAGAAACGTTGATTTTTATCTCACAGAAACATGCTTATTTCCAACTCGTAACGCTCTCGAAAACGAATGGACCCCGTTTACAAGTGTTTGCATGTAGCCATTGTTATCAGAAAGAGTTTCCTGACAAAACAAGAGAAACTTCTCAGCCAGAGTGATGCGAGCATTTTTAGCACATGCATATCTGTGTATGTAAAAGTTGAATGTATTGATGAACTGTGGGAACGAGAAATTAGCTTGAAAACATATCAGACCTGCagtttgtatatatccataaaaaggatgcggattcatgatttcgactggctgagaaaagctgcctgcctgtctgtctcatccggACTCCCGGCACGTTCAttgctatgggacagctggagatcgaatttgaatattgtaACAATGTTGCAAATACCTGAGGGACACACCGCAAGGTTTATACAAAaatccgctgttgaaaactaaatgttagtcttaaagaaatgtgagataatgtctagatgctttttatagtggagatcaagtttataaattgtgaCCGACCGGCTTAAATCGGTCTCGTGccgcaaaatttgaaattgtgttttttttttttttacattggataaaagtggagactcagagctacaaaatggtatttcatacactgcatttgaggaacaatgggaaagtaattctgctttgaaagttgataaacttataaactcacttttgagaaaattgccttttgaatgttttggtacctactggagtagggtgtctacacccattcagcattgttcacaccctcttaaaatgggtggggctaaacaatgaaccataatcccaatccatagagtGCTAGCTAAAGTTATCCAAATAGGTTCagtgttagctagttagcttgctaacattaggctataactagcaatgcgaaATGGCATTCTGATATAACATTAAAGTTACTACACACAGATCATAAGCATAATATTAGCTAGCGAGCCTGCCATctaatgtcagctagctagctaacagcaagctttagcttgcaatgaaaacaactttctgacaaaattataaacgtataatatctgaaactgtagctagactcttacccatatacatggacGAATGCTTCATGGCAGATTGCAACCCCGTTCATTAAATAAGACATCCTGTGTTGTT
>XM_021604503.2
TAGCGCCCCCTATAGACATCCGTCCAATCGAAGAGGACAAGGGCAGAGACGCAGCTGCCTGTCAGTTTCTTCCCTGCTCCTAGTTCCTGAGCACCCGGCGATGATCCAGGCGTGAGTCGTGAATGTACACCGACGGACGGATCGTTCGCTATTGCAGGAAAAGCAGCCTGTCCTGCTAATGTTTCGTCATCAGCCGTGGTTCTAAGCATCACCTCAGGGGGTTCTACACAGAGCAACATGCTGCACCTCACTGtgctcctccttttcctcctgtCCCTCACTTTCCCCTCCACGGATGCATCTGTCTTCGGAGGGGAACCTGGTTTCTACGGAGACGATGCTACAGGTTACGGTCCGGTGTTTGAGGATCAGCCGGTCGAAACCATCTACCCCGAGGAGTCGCCTGAGGCCAAAATCACCATGAGCTGTCGAGCACGAGCCAACCCACCTGCCACATACCAGTGGAGGTTGAACAGCCGGAGCATAGACCTGGATGGTGATAACCATTACACTCAGGTCGGGGGCGACCTGGTCATCTCTAACCCCATCAAGAACAAACACGTTGGGAACTACTCCTGTGTGGCCACCAACGACTACGGCACTGTGGTCAGCCGAGAGGCTGGCGTCCGGTTTGGATacctGGACTTCTTCTCATCTGAGGAAAGAGAGGCGGTGCACGTGAAGGAGGGCCAGGGGGCAGTCCTGCTCTGCGCTCCCCCACCACACTACCCACACGAGCTGTCATTCCGCTGGATTCTGAACGAGTTCCCTATCTTCATCACGCTGGATAAACGTCGCTTTGTCTCCCAGACTACAGGGAACCTCTACATCTCAAAGGTGGATTTATCAGACAGTGGCAACTACTCCTGCTTCGTCTCCAGTGCCTCCATCGCCAAGAGCGTCTTCAGCAAGTTCATCCCCCTCGTCCCCCTGACTGAACGTCCAATCAGGAAATACCCCGCTGACATCAAAGTCAAGTTCCCAGACACTTACGCACTGGTGGGACAGAATGTCACAATGGAATGCTTCGCCCTGGGAAAccccatccctcagatCCGCTGGAAGAAGATGAACGGAGAGCTGCCGTCCAATCACGACGTCAGCATGGCGGGGGCCCACCTCCACCTGTACAACGTGCAGTATGAGGACGAGGGGACATACGAGTGTGAGGCCCTCAACTCCAAAGGAAAGGACTGGCACAGGGCACGCGTCTCTGTAGAAGCATTCCCGGAGTGGACCGAGTCCATCAACAGTACAGAGAAGGACATCAGTAGTGACTACACCATGTCCTGTGTGGCTAGCGGCAAGCCCAAACCCCACGTACAGTGGCTCAAGAACAGCTATGCCTACGATAAGCGTGATTTGAGGTTCAGTGCTCTGACGTTTAAGGACTCTGGGATGTACCAGTGTATAGCAGAGAATCGCCATGGAGTCATCTATGCTAACGCAGAGCTGCGAGTGATTGCGTGCGCCCCTACGTTTGAGCACAACCCTGTGAAGTGGAGGATTCTGGGAGCTAAGAACGGCAGAGTGGTCATAGAGTGTAAACCTAAAGCAGCTCCCAAACCCTCGTTCTCCTGGAGCAAGGGCACTGAACTGCTCTTCAACTCTACCAGGGTGTTAATCTGGGAGGATGGTAGTCTGGAAATTCTGAATGTGACCGAAGCAGACGAGGGGCGTTACACCTGCTTTGCTGAGAACAATCGGGGCAAGGCCAACAGCACAGGCTCCCTCTCCATCACAGAGGCCACTAAGATCACCTTGGCTCCTTCCAACGCAGACGTGACGGTGGGGGAGAGTACCCACATGCAGTGTGCCGCGTCACATGACTCCACGCTGGACATCACATTCGTCTGGACCCTGGACGCCCACTCCATCGACTTCGACCGGGAGGGATCCCACTATGAACGCAACCTGAATGGTGGTTCCAGTGGAGAGCTGCTCATTAAGAACACCCAGCTGAAGCATTCTGGACGTTACACCTGCACCGCCCAGACCCCTGTGGACAACGTCACCGCATCCGCCAATCTGGTAGTCAGAGgTCCGCCTGGGTCTCCAGGTGGGGTGCGCGTGGAGGAGATCAGGGATAAGAGTGTGCGTCTGATCTGGAGCCGAGGTACAGACAACCACAGCCCCATCTCTAAATACACTATCCAGTGCCGGGACTCGTTCTCTCAGGAGGACTGGCGAGACGCCACCACATccCCTCCAGATGTGGAAGGAAATGCAGAGTCGGCCACGGTGGTGGACTTGTTTCCCTGGACAGAGTATGAGTTCAGGGTGATAGCCACCAACACCCTGGGGACAGGAGACCCCAGCAGCCCCTCTCCCAAAGTCACTACGCTGGAGGCAGTTCCTGTGGTGGCGCCCTCAGACATCGGCGGCGGCGGCGGGACCAGCAGGGAGCTGACCATAACTTGGACGCCAGTGCAGCCACAGTACTACTATGGACGTAACTTTGGCTACATCATCGCCTTTAAGCCCCGGGATGGCTACGAGTGGAGGAAGGTGACTGTGGCAGACCCCGGGGCTAAACACTACGTCCACAAAGACCCGTCCATCCTCGCCTCCACAGAGTTTGAGGTCAAAGTGAAGGCCTTCAACAGCAAAGGGGAAGGACCCTATAGTCTCATGGCTGTCATCTACTCTGCGCAGGACGTGCCATCTAAAGCCCCGACTAGTGTGGGGGCCAGGGCGCTGTCCGCCACTGAGGCCATCGTGTGGTGGCTTCCTGTCACCCAGCACACTGTAGAAGGCTACCAGGTGCGGTACTGGAGGAAGGCGGAGGACAGCGAGACGTCCAGTCAGAGGGTGGTGGTGTCCAGCAGAGAGAACCAGACCAGGCTGGATAACATGAGGCCAGACTCCCACTACCTCATAGAGGTCAAGGCCTACAATGCAGCCGGATACGGACCCCCCAGCCAACACTTACAGATCTACACCAAGAAAGCCCCCCCAAGCCGGCCTCCTAAAATAATCAGTAAAAAGCTGAAAGGCACATCAGTGAATATCGCCTGGGAACATGTTGAGCCCTTGGCCAACGAGTCAACAATAGATGGCTACAAGGTCCTGTACAGGCAGGCCAGCAAATCCACTGGGATGCTGTTTACCACTGGGAAGCGGTCCATAGACCTGCCCATGCACAAGGATGGGGACTACATAGTGGAGGTCAGGGCTCACAGCGAGGGAGGGGACGGGGCTGTGGCCCAAATACGCATCTCAGgtGGAGGCATCATGGCTGCCAAGTCCCTCAGCTTGGCCTCCCTGCTTCTGGTGGCTCTGCTCTGCCTGATGGGCCTCTGAATGTAGCGCCATCTTTCTCTGTCTTCACTGTCCAGTCCAGTGAAGGAGACTCTGTGAAGTTGACGCCTATCTATGACAACTTTGGTTTCCACAACCTTTGGTTTCACCTTGCAGgccaaaaaaaaacatattcccCGTTTCGAGGAATTAAGGCTCTGTTTGTGGGGAAAAAGACACAATACAAAATTTGGACAGAGAAGATATCTGGGATCTCTCTTATTTTAAACCTACATTATCGTTGAAGGAGGAGTGTCTAAAGGGGGTGTTTCAACTTTTTCAATATGCCTTATATGTGAACGGTTACACTTATCTTTCACAATGCCATGACTGGCTCTTGACTGGGTGAGGTGTTAGTGCATAGGTACTGCACCAAGATGGCAggtaactgtttaaaaaaaatattgtgatTACAGGCCTTTCTTGTTCATTCATGAAGGTACAGTAGCTTCAAAGTGTGTGTTTCATTTGATGTATGGCATTATGGGCAATTGTTACAACATAGCATtccatatatagtgtatatatatatatataagcttAGCAGGTAATATAGTTGTGAAGGATAAGTGTATGAGTTTCTGAAAATGTCTTTGTGTTTTATATGCATTTCAGTGACTTTTTCTTCCccctttttcttttcttttttcaaGATGAATTACACCATCCCCTTTACAGAGatacagtcaaatcaaatcttGGTCCCCGGCATCCTACGATTTCTCTTATCGAACATCATCAGACAAAAGAGCAATTCATGtaatactaatataatatatgcaaTGTATATGGTTCTGCTATCTTAATAAGTACATATAGCCAGTACATATAGCTTACTATTAACGCTGTAACTTCTTTGTTCAGAGAAACGTTGATTTTTATCTCACAGAAACATGCTTATTTCCAACTCGTAACGCTCTCGAAAACGAATGGACCCCGTTTACAAGTGTTTGCATGTAGCCATTGTTATCAGAAAGAGTTTCCTGACAAAACAAGAGAAACTTCTCAGCCAGAGTGATGCGAGCATTTTTAGCACATGCATATCTGTGTATGTAAAAGTTGAATGTATTGATGAACTGTGGGAACGAGAAATTAGCTTGAAAACATATCAGACCTGCagtttgtatatatccataaaaaggatgcggattcatgatttcgactggctgagaaaagctgcctgcctgtctgtctcatccggACTCCCGGCACGTTCAttgctatgggacagctggagatcgaatttgaatattgtaACAATGTTGCAAATACCTGAGGGACACACCGCAAGGTTTATACAAAaatccgctgttgaaaactaaatgttagtcttaaagaaatgtgagataatgtctagatgctttttatagtggagatcaagtttataaattgtgaCCGACCGGCTTAAATCGGTCTCGTGccgcaaaatttgaaattgtgttttttttttttttacattggataaaagtggagactcagagctacaaaatggtatttcatacactgcatttgaggaacaatgggaaagtaattctgctttgaaagttgataaacttataaactcacttttgagaaaattgccttttgaatgttttggtacctactggagtagggtgtctacacccattcagcattgttcacaccctcttaaaatgggtggggctaaacaatgaaccataatcccaatccatagagtGCTAGCTAAAGTTATCCAAATAGGTTCagtgttagctagttagcttgctaacattaggctataactagcaatgcgaaATGGCATTCTGATATAACATTAAAGTTACTACACACAGATCATAAGCATAATATTAGCTAGCGAGCCTGCCATctaatgtcagctagctagctaacagcaagctttagcttgcaatgaaaacaactttctgacaaaattataaacgtataatatctgaaactgtagctagactcttacccatatacatggacGAATGCTTCATGGCAGATTGCAACCCCGTTCATTAAATAAGACATCCTGTGTTGTT

Function

NR:

description
LOW QUALITY PROTEIN: contactin-1a-like

GO: NA

KEGG:

id description
K06759 CNTN1; contactin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604512.2 False 5251 mRNA 0.49 25 52206796 52267115
XM_021604503.2 True 5321 mRNA 0.49 25 52206796 52321595

Neighbor

gene id symbol gene type direction distance location
LOC118966705 LOC106573087 coding downstream 9591 52192622 ~ 52197205 (-)
LOC110524646 LOC106573087 coding downstream 106600 51992437 ~ 52100196 (-)
LOC110524618 LOC106573092 coding downstream 320120 51850982 ~ 51886676 (-)
LOC110524599 NA coding downstream 531823 51601527 ~ 51674973 (-)
LOC110524590 ccnd1 coding downstream 715077 51479046 ~ 51491719 (-)
LOC110524680 LOC106573083 coding upstream 12300 52333895 ~ 52448300 (-)
LOC110532407 NA coding upstream 137662 52459257 ~ 52462122 (-)
LOC118964321 NA coding upstream 177744 52499339 ~ 52503763 (-)
LOC110524730 LOC106573078 coding upstream 243427 52565022 ~ 52621034 (-)
LOC110524766 pmge coding upstream 302762 52624357 ~ 52636698 (-)
G57301 NA non-coding downstream 63705 52142852 ~ 52143091 (-)
G57284 NA non-coding downstream 73046 52133508 ~ 52133750 (-)
G57281 NA non-coding downstream 78718 52127826 ~ 52128078 (-)
G57263 NA non-coding downstream 93713 52112861 ~ 52113083 (-)
G57674 NA non-coding upstream 128242 52449837 ~ 52450058 (-)
G57696 NA non-coding upstream 144714 52466309 ~ 52466668 (-)
G57698 NA non-coding upstream 146070 52467665 ~ 52467906 (-)
G57715 NA non-coding upstream 157481 52479076 ~ 52479302 (-)
G57717 NA non-coding upstream 157971 52479566 ~ 52479783 (-)
G56764 NA other downstream 459576 51746617 ~ 51747220 (-)
G56372 NA other downstream 802453 51400727 ~ 51412569 (-)
LOC110524514 borcs5 other downstream 1414727 50777716 ~ 50792069 (-)
G55627 NA other downstream 1439365 50765363 ~ 50767431 (-)
G55408 NA other downstream 1794668 50411634 ~ 50412128 (-)
G57742 NA other upstream 174303 52495898 ~ 52496234 (-)
G58565 LOC106561659 other upstream 817863 53139458 ~ 53140304 (-)
LOC110525078 LOC105021811 other upstream 1013129 53334724 ~ 53338484 (-)
G58718 LOC100194703 other upstream 1104369 53425964 ~ 53426316 (-)
G58842 NA other upstream 1266827 53588422 ~ 53588770 (-)

Expression


Co-expression Network