CI01000050_04281992_04287535


Basic Information

Item Value
gene id CI01000050_04281992_04287535
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 4281992 ~ 4287802 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_04281992_04287535.mRNA
GTGACAGAAAATGAAAAGGTATCCACGGTAAAAGAGTTGGTATCAGAACGTTTAAACATCCCTCCAAGTCAGCAGAGACTGCTGTATAAAGGAAAAGCGCTCGCAGTGTTTTTCTCAGATTTTGAGGCAGAGTTCCAGTCATTGCCAGTTTGCATGCATTGTGTTGTGAATGTCATTGTGACGGTTGTTTTGCTGTTTACAGATGAACACAGATTGAGTGATTACTCCATTGGACCGGAGGCCAAGCTGAATCTGGTTGTGCGGCCAGCAGGAGAGCGGAGCAGCGGCGCGGGAGGAACCAGCAGCTATAATGATAAAGCAGGCAGTGGCGTATGGCAGTTATTGTCTACTGTCCTGGCCAAACATTTCAGCCCAGCTGATGCAGCAAAAGTGCAGGAACAACTTATTAAGGATTATGAGCGCTCTCTCAGACAGCTCAGTTTGGATGATATTGAGCGTCTGGCCAGCCGTCTGCTTCATCCTGAGACAGAGGCCATGGATACCTCATACATGGACTAAAACTCACTAGACTGATGGAAAAAAACTCAAGCTCCATTGGACTCCCCCTACCACATACATGGTTTGAAACGTCCAGGTCAGGGAGTAGGATGTACTTCAAATGGACTTTTAGGGAGGGAAAAAAGTCAGATGTCCCCCTCACATCACAGACTGGGCTTCTCTGATGTTCAAGAGGCCACGATGCTTACCATTGCTTTCCCATCAGAGGAAACCGGTGGTGCTTTTAGTGCAACTTTGTAAATAATGTGTGCAAATGGTTAAACGATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_04281992_04287535.mRNA True 786 mRNA 0.47 3 4281992 4287802

Neighbor

gene id symbol gene type direction distance location
CI01000050_04275924_04277061 NA coding upstream 4345 4275924 ~ 4277647 (+)
CI01000050_04190820_04204792 BIN3 coding upstream 76069 4190820 ~ 4205923 (+)
CI01000050_04159232_04161131 NA coding upstream 120861 4159011 ~ 4161131 (+)
CI01000050_04122649_04127014 EGR3 coding upstream 154947 4122649 ~ 4127045 (+)
CI01000050_03989489_04121180 NA coding upstream 160599 3988257 ~ 4121393 (+)
CI01000050_04303341_04330327 DNM1L coding downstream 15539 4303341 ~ 4331241 (+)
CI01000050_04406761_04429903 DISP3 coding downstream 118959 4406761 ~ 4429903 (+)
CI01000050_04430129_04436139 NA coding downstream 142177 4429979 ~ 4437457 (+)
CI01000050_04591548_04592778 NA coding downstream 302124 4589926 ~ 4593049 (+)
CI01000050_04617015_04691858 ANTXR1A, ANTXRL, ANTXR1 coding downstream 328935 4616737 ~ 4691974 (+)
G214771 NA non-coding upstream 10145 4271588 ~ 4271847 (+)
G214770 NA non-coding upstream 10482 4271265 ~ 4271510 (+)
G214767 NA non-coding upstream 14565 4267104 ~ 4267427 (+)
G214754 NA non-coding upstream 15309 4266368 ~ 4266683 (+)
G214798 NA non-coding downstream 64533 4352335 ~ 4352724 (+)
G214796 NA non-coding downstream 163496 4451298 ~ 4474391 (+)
G214822 NA non-coding downstream 185029 4472831 ~ 4512459 (+)
G214795 NA non-coding downstream 218957 4506759 ~ 4543037 (+)
G214787 NA non-coding downstream 220693 4508495 ~ 4508867 (+)
G214717 NA other upstream 173712 4107582 ~ 4108280 (+)
CI01000050_03938328_03956122 RHOBTB2 other upstream 324948 3931890 ~ 3957044 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other upstream 473253 3805143 ~ 3808870 (+)
CI01000050_02852118_02864754 RNF122 other upstream 1416170 2852118 ~ 2865822 (+)
G212927 NA other upstream 1506859 2774839 ~ 2775133 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 1119783 5407585 ~ 5409417 (+)
G215539 NA other downstream 1341808 5629610 ~ 5631203 (+)
G215773 NA other downstream 2373386 6661188 ~ 6665703 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036034 NA coding NC_007119.7 CM002892.2 50953776 ~ 50962889 (+)