CI01000050_03989489_04121180


Basic Information

Item Value
gene id CI01000050_03989489_04121180
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3988257 ~ 4121393 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_03989489_04121180.mRNA
CTATAAAAAAAGTTTACCTAACTTAAAAAAATTAAGGCAATCTATTACAATCAATTTGTTAAGGATACCTCAACTAACAACTGACAACTAAAATACCTTTGGTTATGTAGTGATTTTTACTCCATTCACCAGTGACGTAGTGATTTTTGATCACGTGTCACTTAAGGTGTGGTTATGAGTGTATCAGATGACCCCTCCCCCCCTTTTGTAATACGGGGCACCATTTAAGAATACTATCTTAACAATTTAAGAACACTCCAAAAGAGCTGTTCAATAATTCAGAATTAACATAAACTGGAGGGAGTCGGTCAACTGATTTATCTGAAGGATTTGCGAGAGTCTGACCAACTAGTAGAGTCTTTGATCATCAACACAAGGAAGACACAGTTATAATAAAATCAATGAAATTTATTAACAATAGATATGCAAGAGTAAATACCACAACGATTAATAATGAAATAATGAATATGCACTTCTAAAAGATAGTAAAATAATAATCAAAGGAAAATACTGAATTAAATCAAAGCAACAAATAAATGAAGTGAACACAGAATGGATAAATGCAATGCTGTTGAACTGAATGTAGAATGGAAGAGAACTGTATGGGAATGCTTCTTATGGAAGCCACCTAATGGCTCTGGTAAAATGGTGATAAATAATTGCTTATTTATCATTCAACAAATAATATCCCTATTATTTGTAACAAGCTGACCTCAAGTAACTGTTATCTAAACAGATTAGAAAAACATATGCTGCATGTATAAACTAATGCCAAGGTCTCTAGAAAGAGGTTTGGTAAGTTTATATTTACGTTCCACACAGTCGGGTGATCAATCCGGTAGCAGAGACGTCTTCCACTGATGATGCAGGCTGCGTGCAGTGGGAGGGCGCGGAGTTGCGATCCAGTAGTCGTGCAACGCTGGGCTGGAGGATGCTGAACTTCGGTTGCGCCAAGAGGGTCCTTTAGGATGGACTGGGCAGCTGGGTCAGATGAATCTTCACAGGTTCCTTTGCAGGCTGGCTGCGTCGCTGAGGAGCCGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGGGCTGGAGGATGCTGAACTTCGGTTGCGCCAAGAGGGTCCTTTAGGATGGACTGGGCAGCTGGGTCAGATGAATCTTCACAGGTTCCTTTGCAGGCTGGCTGCGTCGCTGAGGAGCCGTGTGGTACAGGCAATGTCTGCCAATGCAGAGGTCCTTTACGGACTGGGCTGCGCTGCTGTAGGAGCCCATTGAAGTATCAAATTAAGGAAGCAGAGACACGTACACGGCACATATGGAATCTAACACATGCAGCATTGTACTCTTGCGTGGATCTCAGCTGCAGAAATATGTTTCTGCCTCCAAGCCAGAAGACTGACCAGATTGGAGAGGAGAAGAAATACACTTTATTAATGGTGGACCCAGATGCTCCAAGTCGTAAGAAACCCTCTCGTGCTTACTGGAGACACTGGTTACTGGCTGACATTAAGCTACCCGAGACACCGTTCGCCGCCACTGGTCCGCTCACTTCTCCGCGAACGCCCAACCCGACAGATTTACCGACATATGCAGGGCTTGTTGTTTTCGAAGTAGTTCATTTGCAGACGTGTGCTGCTAACCTCACAAGCCACCTGTATCTTTCTGAGAGACGGAATGCTGGTCCTCCAGGTGTAAATGTCATGAAAAATAGGTGTGACTCTTTCCCAGTGATCCACTGTGGAACTGCCCACCCACTCCACCGGGGGAAGCGCTCAAGACAGGAGATGTCAGAGGCATTGAACTATCCGCTCTCTAAACCGGAACCTTGCGAACCAAATACAGACAGCGAGGGGCGTGGCCGGATCAAGGCCTTATTTGGAGTTTCCACTTCAGTGGCGAACTTGGCGCTCGAGGCCAAAGCCAAGCCTACAGATTTGCCGCGCGCCTGCAGTATTTACACGCGATTAACTCTCTGGCAGTTACAGTCTTTGTACAGCCCAGTCTCAGTTACCGTTGCTTCTTCTGTTCTTGATCATCTGTTGCAGTCAATTGCTTAAACCACTTAGTTGACGTTTACAAATGATTAATTTGGGGTTTTATTTTTTATTTAACTCTCAACACAAACCATTGAGCAGAAAAACAGTCTCCTCCAGTCTCCATTAATCACTACATTCTCATGATATTCTATTCTCACGGGTCTATGACCTTTATATGGACAGTCTGACAACCCACACTGACTGAGAATAGGCTATAAAATATCATTTGTAATA
>TU243629
TACAGATTTGCCGCGCGCCTGCAGTATTTACACGCGATTAACTCTCTGGCAGTTACAGTCTTTGTACAGCCCAGTCTCAGTTACCGTTGCTTCTTCTGTTCTTGATCATCTGTTGCAGTCAATTGCTTAAACCACTTAGTTGACGTTTACAAATGATTAATTTGGGGTTTTATTTTTTATTTAACTCTCAACACAAACCATTGAGCAGAAAAACAGTCTCCTCCAGTCTCCATTAATCACTACATTCTCATGATATTCTATTCTCACGGGTCTATGACCTTTATATGGACAGTCTGACAACCCACACTGACTGAGAATAGGCTATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_03989489_04121180.mRNA False 2372 mRNA 0.41 7 3988257 4121393
TU243629 True 328 lncRNA 0.40 1 4121051 4121378

Neighbor

gene id symbol gene type direction distance location
CI01000050_03938328_03956122 RHOBTB2 coding upstream 31403 3931890 ~ 3957044 (+)
CI01000050_03814516_03818892 NA coding upstream 169318 3813420 ~ 3818939 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 coding upstream 179387 3805143 ~ 3808870 (+)
CI01000050_03679119_03683710 NA coding upstream 304088 3679080 ~ 3684169 (+)
CI01000050_03641769_03645039 NA coding upstream 343148 3639187 ~ 3645109 (+)
CI01000050_04122649_04127014 EGR3 coding downstream 1256 4122649 ~ 4127045 (+)
CI01000050_04159232_04161131 NA coding downstream 37618 4159011 ~ 4161131 (+)
CI01000050_04190820_04204792 BIN3 coding downstream 69427 4190820 ~ 4205923 (+)
CI01000050_04275924_04277061 NA coding downstream 154531 4275924 ~ 4277647 (+)
CI01000050_04281992_04287535 NA coding downstream 160599 4281992 ~ 4287802 (+)
G214575 NA non-coding upstream 26892 3907109 ~ 3961365 (+)
G214571 NA non-coding upstream 71096 3912797 ~ 3917161 (+)
G214632 NA non-coding upstream 83176 3904775 ~ 3905081 (+)
G214605 NA non-coding upstream 84529 3873155 ~ 3903728 (+)
G214754 NA non-coding downstream 144975 4266368 ~ 4266683 (+)
G214767 NA non-coding downstream 145711 4267104 ~ 4267427 (+)
G214770 NA non-coding downstream 149872 4271265 ~ 4271510 (+)
G214771 NA non-coding downstream 150195 4271588 ~ 4271847 (+)
G214798 NA non-coding downstream 230942 4352335 ~ 4352724 (+)
CI01000050_02852118_02864754 RNF122 other upstream 1122435 2852118 ~ 2865822 (+)
G212927 NA other upstream 1213124 2774839 ~ 2775133 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other upstream 2290849 1691374 ~ 1698973 (+)
CI01000050_04591548_04592778 NA other downstream 470162 4589926 ~ 4593049 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 1286192 5407585 ~ 5409417 (+)
G215539 NA other downstream 1508217 5629610 ~ 5631203 (+)
G215773 NA other downstream 2539795 6661188 ~ 6665703 (+)
G214727 NA non-coding upstream 3942 4116809 ~ 4117109 (+)
G214725 NA non-coding upstream 5450 4115366 ~ 4115601 (+)
G214719 NA non-coding upstream 11161 4109495 ~ 4109890 (+)
G214717 NA other upstream 12771 4107582 ~ 4108280 (+)

Expression


Co-expression Network