| Item | Value |
|---|---|
| gene id | CI01000050_03938328_03956122 |
| gene name | RHOBTB2 |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000050 |
| NCBI id | null |
| chromosome length | 7556436 |
| location | 3931890 ~ 3957044 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| rhobtb2 | Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; engulfment of apoptotic cell; and regulation of cell shape. Predicted to be located in endosome membrane. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Implicated in developmental and epileptic encephalopathy. |
| id | description |
|---|---|
| K07868 | RHOBTB1_2; Rho-related BTB domain-containing protein 1/2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000050_03938328_03956122.mRNA | False | 2680 | mRNA | 0.48 | 8 | 3938328 | 3956854 |
| TU243473 | False | 7918 | lncRNA | 0.36 | 2 | 3931890 | 3940139 |
| TU243465 | True | 1336 | TUCP | 0.41 | 3 | 3950602 | 3957044 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000050_03814516_03818892 | NA | coding | upstream | 119389 | 3813420 ~ 3818939 (+) |
| CI01000050_03807697_03808793 | CLCN5B, CLCN5 | coding | upstream | 129458 | 3805143 ~ 3808870 (+) |
| CI01000050_03679119_03683710 | NA | coding | upstream | 254159 | 3679080 ~ 3684169 (+) |
| CI01000050_03641769_03645039 | NA | coding | upstream | 293219 | 3639187 ~ 3645109 (+) |
| CI01000050_03599274_03618237 | SLC25A37 | coding | upstream | 319288 | 3599274 ~ 3619040 (+) |
| CI01000050_03989489_04121180 | NA | coding | downstream | 31403 | 3988257 ~ 4121393 (+) |
| CI01000050_04122649_04127014 | EGR3 | coding | downstream | 165795 | 4122649 ~ 4127045 (+) |
| CI01000050_04159232_04161131 | NA | coding | downstream | 202157 | 4159011 ~ 4161131 (+) |
| CI01000050_04190820_04204792 | BIN3 | coding | downstream | 233966 | 4190820 ~ 4205923 (+) |
| CI01000050_04275924_04277061 | NA | coding | downstream | 319070 | 4275924 ~ 4277647 (+) |
| G214571 | NA | non-coding | upstream | 21167 | 3912797 ~ 3917161 (+) |
| G214632 | NA | non-coding | upstream | 33247 | 3904775 ~ 3905081 (+) |
| G214605 | NA | non-coding | upstream | 34600 | 3873155 ~ 3903728 (+) |
| G214601 | NA | non-coding | upstream | 68822 | 3869280 ~ 3869506 (+) |
| G214567 | NA | non-coding | upstream | 94602 | 3843380 ~ 3843726 (+) |
| G214719 | NA | non-coding | downstream | 152641 | 4109495 ~ 4109890 (+) |
| G214725 | NA | non-coding | downstream | 158512 | 4115366 ~ 4115601 (+) |
| G214727 | NA | non-coding | downstream | 159955 | 4116809 ~ 4117109 (+) |
| G214754 | NA | non-coding | downstream | 309514 | 4266368 ~ 4266683 (+) |
| CI01000050_02852118_02864754 | RNF122 | other | upstream | 1072506 | 2852118 ~ 2865822 (+) |
| G212927 | NA | other | upstream | 1163195 | 2774839 ~ 2775133 (+) |
| CI01000050_01691894_01697791 | SULT1ST2, SULT1ST3 | other | upstream | 2240920 | 1691374 ~ 1698973 (+) |
| CI01000050_01296683_01297763 | SELENOK | other | upstream | 2638722 | 1296365 ~ 1298255 (+) |
| G214717 | NA | other | downstream | 150728 | 4107582 ~ 4108280 (+) |
| CI01000050_04591548_04592778 | NA | other | downstream | 634701 | 4589926 ~ 4593049 (+) |
| CI01000050_05407682_05409108 | FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A | other | downstream | 1450731 | 5407585 ~ 5409417 (+) |
| G215539 | NA | other | downstream | 1672756 | 5629610 ~ 5631203 (+) |
| G215773 | NA | other | downstream | 2704334 | 6661188 ~ 6665703 (+) |
| CI01000050_03938328_03956122 | RHOBTB2 | other | downstream | 10463 | 3931890 ~ 3957044 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | XLOC_036774 | CABZ01060030.2 | coding | NC_007119.7 | CM002892.2 | 50520139 ~ 50525360 (-) |