CI01000050_01296683_01297763 (SELENOK)


Basic Information

Item Value
gene id CI01000050_01296683_01297763
gene name SELENOK
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 1296365 ~ 1298255 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_01296683_01297763.mRNA
AAATAAATGGGTAATAATACCAAATCAAATAAACAGCATCTATTGGTACAGTTTACAGCAATACGTTCTTTAAAAATATATGAAAAATATTTTTTAATTAATGCTTGGACAACAATTACAGAACAAAACAGCCAATGGTGTAACGAATAAATAATAATAATAATAAATAATAATAATAATAATAATAATAATAATGAAAGGCATTGCTTTTTCACAACAAAAAAAGTCTAGTCAAATACCAGTGAAACGTCACGAACAAATATTGAGGCAGTGCGCAGAACCGGAAGCCGCGCAGTTTCCGGTTAAACAGCGCCGACGATGGTGTATGTGTCAAATGGTCAGGTTCTGGACAGCAGGAGCCGGTCGCCATGGAGGTTGTCTTTCTTCAGTGACCTGTTTTGGTCTGCAGTCGAGTTTATTGGCTTGTTCTTCCAGACGCTTATTCAACCAGATCTGTCCAAAGATGGACACAACAGAGCATCGTCTCGCTTCAGCGACGGCAGAGGTCCTCCTGGATTCCCTGGCGGCCGCAGACGGATGGGTAGAATAAACCATGGCGCAGGTCCCACTCCTCCTCCCATGGGCGGGGGTGGATGAGGAAGGTTAGTTAGAGCAACCTAATTGAATACCTAATAGCAACCAATACTGAGAGAAATTCATTAAAATGTCAATTTTTACCATTTATTTATTTTATTTTATTTATTATATATACAGTAGTGTGCAAAAATGACATCCGGAGGGGATATTTGTTATTAATGACCCTACAAGTTTGATTAAACCATCAAAATATGAGGATATTTTTTAAATATCTTAAATATGTGGAAAGAACAAAACACTAAACTTGGTTAAGGTATTTATCTGACAAAATTATTTGGCAAAAAAGGCAAATTACAGCTGCAGGTTTGAAAAACAAGCAAAGAAAAACAAAAAGCGGAAAGGAAAAAGCAAACATTGACTACAACTTAATCGGTTATTAATATTTCATTGGCTCTCTCTTGTGTTCATAATTTCTTTGTATGACAGCCTGGACAAAAATTATGTCACATAATTTGGAATGTTTCTACAGAAGAGGATTAGGGCCAAGCAATA

Function

symbol description
selenok Predicted to be involved in calcium ion transport; endoplasmic reticulum calcium ion homeostasis; and protein palmitoylation. Predicted to act upstream of or within ion transport. Predicted to be located in endoplasmic reticulum. Predicted to be active in Golgi apparatus and endoplasmic reticulum membrane. Orthologous to human SELENOK (selenoprotein K).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_01296683_01297763.mRNA False 1089 mRNA 0.36 4 1296365 1298255

Neighbor

gene id symbol gene type direction distance location
CI01000050_01284083_01292321 NA coding upstream 2645 1284019 ~ 1293720 (+)
CI01000050_01261502_01265283 PARAPINOPSINA coding upstream 31082 1261367 ~ 1265283 (+)
CI01000050_01048195_01109752 NA coding upstream 186613 1047970 ~ 1109752 (+)
CI01000050_01039500_01042679 TLR9 coding upstream 253566 1039500 ~ 1042799 (+)
CI01000050_01023375_01033682 APEH coding upstream 262196 1023375 ~ 1034169 (+)
CI01000050_01301443_01316664 ACTR8 coding downstream 3188 1301443 ~ 1317171 (+)
CI01000050_01346318_01366815 CHDH coding downstream 47940 1346195 ~ 1367657 (+)
CI01000050_01374628_01443035 NA coding downstream 76024 1374279 ~ 1443180 (+)
CI01000050_01552520_01553273 NA coding downstream 254099 1552354 ~ 1553646 (+)
CI01000050_01644444_01659372 GABRD, GBRD coding downstream 346189 1644444 ~ 1659412 (+)
G212357 NA non-coding upstream 62631 1233092 ~ 1233734 (+)
G212376 NA non-coding upstream 94564 1196025 ~ 1201801 (+)
G212366 NA non-coding upstream 120322 1172134 ~ 1176043 (+)
G212296 NA non-coding upstream 386336 909813 ~ 910029 (+)
G212294 NA non-coding upstream 468280 827818 ~ 828085 (+)
G212466 NA non-coding downstream 34112 1332367 ~ 1336316 (+)
G212473 NA non-coding downstream 60348 1358603 ~ 1363929 (+)
G212508 NA non-coding downstream 211678 1509933 ~ 1510161 (+)
G212522 NA non-coding downstream 248766 1547021 ~ 1548377 (+)
G212527 NA non-coding downstream 262873 1561128 ~ 1561354 (+)
G212184 NA other upstream 862159 433684 ~ 434206 (+)
G212006 NA other upstream 1158354 82604 ~ 138011 (+)
CI01000050_00012155_00026251 NA other upstream 1269953 12079 ~ 26412 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other downstream 393548 1691374 ~ 1698973 (+)
G212927 NA other downstream 1476584 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 1544564 2852118 ~ 2865822 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 2506888 3805143 ~ 3808870 (+)
CI01000050_03938328_03956122 RHOBTB2 other downstream 2652347 3931890 ~ 3957044 (+)

Expression


Co-expression Network