CI01000050_01039500_01042679 (TLR9)


Basic Information

Item Value
gene id CI01000050_01039500_01042679
gene name TLR9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 1039500 ~ 1042799 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_01039500_01042679.mRNA
GACATGTTTGGACACGTGTATCTGATTCTCATACTGAATCAGTTTCATCTTTTTGCTACTAAGCATCCTGAATTCTATCCATGTGAAAGTCGCACTTCCAAGGATGGACACATAAATATCGACTGCCAGCACAGACGTCTCTCTAAAATCCCCAAGTTCATATCCCTATCTGTTGTATCACTCAACCTAAATCAAAACCATATACACTACATTAAAGGTGATGCATTTTCTGGTTTACCCAATCTCAAGCATCTCAGCTTGATGTGGAACTGTGTACCAGATCCTCTTAAGGAGCAGAGATGGCCTTCATGCAACCTGAATGTTGATCCAGAAGCATTTGTCGGACTTAAAAACCTAACTTCCCTCCAGTTAGCAGGGAATAGCCTGAAGACCATTCCTCCTCTACCAAAGCAGCTTTTAGTCTTGGGACTGGAATTTAACAATATTTTTCATATTGTCAAACCACTCGGTACACCGCTACTAAAACAACTACTGCTAAACAAGAATTGTTTCTACGCCAACCCATGTTATCGGCCTTACTTTATCGACCCACGTGTGTTTCAAGAACTTCCTGAGCTTTTGAACCTTACCCTTAGTTACAACAATGTGACCAATGTTCCCTTACACCTTCCACCTTCACTAGAAAGTCTAGACTTGGGAGAGAACAAGATCACAGGTATTACTAAAGAGTCCTTTGCGAATCTTACACGTCTGCGACACCTTAACCTGGGGTGGAATTGCCAAAGATGCGATCATGCTTCTGAACCCTGTTTCCCATGCCCAAACAACCAATCTCTGCGTCTGCATCAGGATGCATTTTTGGATCAGAGAGACTCTCTAACTAGTCTAAGTTTACGAGGCAACTCTCTTCGTAAACTTCCTCAGTATCTCTTTATGCACCTGCACAATCTCAAAGAGCTAGATCTATCTGACAACTTTTTAGCCTACACCATACAAAATGGCACCTTTTATGAAGAGCTCCAGAATGTCGTGTCCCTCAGTCTGCTCTACAACTATGAACCCCTGAAGTCCTTTCCTGAATTGATTCTGTCACCTGCCATAGAGAAGATGACGGCTCTAAGAGAGTTGTACCTGAGCGGATTTTTCTTCAAAGAACTGTCGAACCACAGCCTCGCACCTCTGATCAAACTGCCAAGACTTGAGTCCCTAGAGCTACGCATGAACTTCATCTGCTTCATTAGCATTGATTCTATTAGCCAGCTGAGGACATTAAAGAGGGTGGGTCTTTCCCAAAACATGCTTGCTTTCAGTCCATGCTATTCAACCTGCAATTCTGAAGCCATACTGCAATACCAAACCCTTGAAAAACGTCATGACTATGAACAAATGCATGAAGTCCCCGCTCCAAACTCAAAGCTGAACAATATGCAGAGCTCTGAAGGAGATTACTGTCCGTTTTATTATTCTATGTGGCATTTCAAAAAGCAGATCTGCTCTAAAAGCCTGTTTTTTGACCTGTCTCAAAACAGCATCCCATGGCTGAATGCAAGTACTTTTAGAGGCATGGAAAACGTGGTGTGCATAGATCTGTCCTACAACTACATCAGTCAATCTTTAAATGGCCGGCAGTTTTCACATCTAAGCAAACTAGCTTTCCTTAATATGGCGCACAACCGCATTGACCTGTACTCTGAAAAGGCCTTCCATGAGGTTAGTGGAACCCTGAAAGCTCTTGACCTCAGCAACAACGAATTCCACTTTGTAATGAAGGGTATGGGACATCGCTTCACATTCCTTTCACACTTGACGTCTCTTAAAGTACTGAGTCTAGCAAACAATCACATTGGTCTTCGAATCTCTAACACTCTTAATAGTACTTCTCTGAAATATCTTGCGTTCTCTGGAAATCGCTTGGACATAATGTGGGACTCTAGGCGTAACCAATACATACATTTCTTTCAGGGTCTTACTAACCTTACACACTTAGACATTTCTGAAAACCAGCTCAAATCGTTTCCCCCAGAGGTAATAGTAAACTTGCCTCCAAGCCTCCAGGTGCTCAGAGTCGACTCCAACATGTTGAGTTATTTCCCCTGGGCCAACATCTCAGTTCTCAGACAGCTCTGCTACCTGAACCTTAGTTCAAACATGCTTTTATTTTTACCTAATATCCATTTTGAGCTCCACCTCGTAAGCCTGGACTTAAGTCACAATCGACTAGTTACAATCCCAAAGGCTTTCCTTAGTCAGGCAGTACACCTTAAAAACCTAATGCTTAACCACAACCAGCTGAAGATCCTTGATGTACAAGCTCTTCCCTTGTTATTCCATAAAGGTCATACTTTCTGTCCAGCTGGGCAGAATAAAAATAGGTCCTCCTGCAAACTTGTGCTGCATTCCAATCCTTTTATTTGCAGTTGCGTTATCTCGGGGTTTGCTAAATTTCTCAGAGAAACTGAATTGGATATCCCACATCTCACCACACAGGTTCACTGTGCTTACCCAGAGTCATTGTCTGGTGTGAACGTTCTCTCGATTGACCTTCGCTCATGCCAGGAGATATTTGGGGGATTCGCTTTACTCTGTACTTTATTGTTGACATTGGCAGCAACCATCATTCCCCTCCTGAAGCATCTCTACGGTTGGGACCTGTGGTATTGCATCCAGATCCTGTGGACTGGACACAGAGGACACACTCCAGCTAATGGTAACATGACCGATGACCAGTATGATGCATTTGTGGTCTTTGATACAAGTAACAAGGCAGTCAGAGATTGGATCTACAAGGAAATGATTGTGAGATTGGAGAACAGGGGGAGATGGCGCTTTCGACTTTGTCTAGAGGAACGTGACTGGTTGCCTGGAGTATCGTGCATAGAGAATCTCCACAAGGCAGTTTACAGCAGCAGAAAGACGGTGTTCGTATTGACTAGCCCTAGTGGCTATTCTCAATCAAGTGGGGTGGTCCGACAAGCCTTCCTCCTGGTTCAGCAGCGGCTTCTTGATGAGAAAGTGGATGTTGCAGTTCTTGTTTTGCTAGACTTCCTATTCCCCAAGTTCAAATACCTTCAGATGAGGAAACGGCTCTGCAAAAAGTCAGTCTTATCCTGGCCCAAGAACCCACGAGTGCAGCCGCTCTTCTGGAATAACTTGCGTGTCGCTCTTGTCTCCGACAATGTCAAAGCCTACAACAAAAATGTCACAGAGAGCTTCTTCTAACAAGGCTAAAATGTAATGAGGATATGTTTTATGAAGTCCTATTGTTTTGTTTTTCACATTTTTGCCAAATGGGTTGTGGCTAAACAGAATGTAATTTTTCTAACACATTTTAAATGGTGA

Function

symbol description
tlr9 Predicted to enable pattern recognition receptor activity. Acts upstream of or within antibacterial humoral response and toll-like receptor signaling pathway. Located in endoplasmic reticulum. Is expressed in blood; heart; liver; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including allergic bronchopulmonary aspergillosis; cystic fibrosis; glomerulonephritis (multiple); hepatitis B; and lung disease (multiple). Orthologous to human TLR9 (toll like receptor 9).

NR:

description
TLR9 isoform B

GO:

id name namespace
GO:0002224 toll-like receptor signaling pathway biological_process

KEGG:

id description
K10161 TLR9, CD289; toll-like receptor 9

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_01039500_01042679.mRNA True 3300 mRNA 0.43 1 1039500 1042799

Neighbor

gene id symbol gene type direction distance location
CI01000050_01023375_01033682 APEH coding upstream 5331 1023375 ~ 1034169 (+)
CI01000050_01002924_01005496 NA coding upstream 33986 1002924 ~ 1005514 (+)
CI01000050_00967544_00997883 BSN, BSNA coding upstream 41617 967544 ~ 997883 (+)
CI01000050_00931338_00939002 DCAF1 coding upstream 100498 931338 ~ 939002 (+)
CI01000050_00916485_00921744 DCAF1 coding upstream 117756 916485 ~ 921744 (+)
CI01000050_01048195_01109752 NA coding downstream 5171 1047970 ~ 1109752 (+)
CI01000050_01261502_01265283 PARAPINOPSINA coding downstream 218568 1261367 ~ 1265283 (+)
CI01000050_01284083_01292321 NA coding downstream 241220 1284019 ~ 1293720 (+)
CI01000050_01296683_01297763 SELENOK coding downstream 253566 1296365 ~ 1298255 (+)
CI01000050_01301443_01316664 ACTR8 coding downstream 258644 1301443 ~ 1317171 (+)
G212296 NA non-coding upstream 129471 909813 ~ 910029 (+)
G212294 NA non-coding upstream 211415 827818 ~ 828085 (+)
G212293 NA non-coding upstream 212372 826804 ~ 827128 (+)
G212104 NA non-coding upstream 275065 763998 ~ 764435 (+)
G212269 NA non-coding upstream 292922 745947 ~ 746578 (+)
G212366 NA non-coding downstream 129335 1172134 ~ 1176043 (+)
G212376 NA non-coding downstream 153226 1196025 ~ 1201801 (+)
G212357 NA non-coding downstream 190293 1233092 ~ 1233734 (+)
G212466 NA non-coding downstream 289568 1332367 ~ 1336316 (+)
G212473 NA non-coding downstream 315804 1358603 ~ 1363929 (+)
G212184 NA other upstream 605294 433684 ~ 434206 (+)
G212006 NA other upstream 901489 82604 ~ 138011 (+)
CI01000050_00012155_00026251 NA other upstream 1013088 12079 ~ 26412 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other downstream 649004 1691374 ~ 1698973 (+)
G212927 NA other downstream 1732040 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 1800020 2852118 ~ 2865822 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 2762344 3805143 ~ 3808870 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036820 tlr9 coding NC_007119.7 CM002892.2 53730368 ~ 53735399 (-)