G212006


Basic Information

Item Value
gene id G212006
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 82604 ~ 138011 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU240505
CTGACTTGTCATAGGTCACCTACAGGAAATGTTTAGCAATGCAAACAGGATAAAGGTTGATTTTAGCTAGTGGACAGATACTTGGATTCTACATGGTCGGCTTACCTCATCACATGCTGAGCAACGTGGCTTAAGTCGTTCAGCATGGTGGCGGCCACAGTAGATCTTGCCATCCAGGTGGAAGTAGATGAGATCTACCAATAGCTCGGAACACATGCAGCACACGAAACAGTGCGGGTGCCAACACAGGCCATGGCCAACCCGTGAGGCAAACACTGCGATATCGCCACCGTTGATCTGGTCTCCGCACTGTTCACATATAGCTCCAGTTATAGTGAGGGGTAGAGGTCGGACGGTGCCTCTGCCTAGATTGTCTCTCTTTCGCTGGTTACTGAAGATCTTTAATTCCCGCTTTTCTTCTTCATCCAGTGAGGTACAGTACCGAACCTCGTTGTCATGCGGTGGCAGTTGTTGAAGGAGTTGTTTGATTCGATGCTTTTCACCAATACTGTTCACATAAGGGACCTTATCTTCTGGGAAAAAGCTGTAGTATTGATGAACCTGTTCAGGTTTGAGGCCAGGTGGCACCCAGGCGTACTCCTCTAGCGCACAGCCAGAGTCATCGTCAGAGGTCGAGTTCCTCTGGAAGTCAAACATGATTTTAGAGACTGTTCTCTCCATATCCAGAGCCATATCACCACTTCATACCATTAATCACTTGATTTCTTTCTCCCTTTTTCTCGCTTGTTGGTGTTTTCCTGTCTGTGCAGTATGTTGCAGGTTTTATGATTGCTGAAGGAATGGTTGCTGGTAGCAATCTTCCTTGTCTCAGACAGGGAATGAGCCTGGGGTTCTGGGAATGTTTTACCTTCTTTTCAGTTATTAGGATTATGTAGGATATGCAGCGTTATGTGGAGTGTTTGCAGTGAGGAAGATGCTTTCATTTTCCTCTGTGAGAGTGCACTGCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU240505 True 969 TUCP 0.47 5 82604 138011

Neighbor

gene id symbol gene type direction distance location
CI01000050_00068652_00068867 NA coding upstream 13261 68652 ~ 69343 (+)
CI01000050_00012155_00026251 NA coding upstream 56353 12079 ~ 26412 (+)
CI01000050_00000004_00000459 NA coding upstream 81999 4 ~ 605 (+)
CI01000050_00148346_00149410 RHO coding downstream 10209 148220 ~ 149781 (+)
CI01000050_00235034_00262436 NA coding downstream 97023 235034 ~ 263619 (+)
CI01000050_00274836_00275609 NA coding downstream 136684 274695 ~ 276437 (+)
CI01000050_00302983_00357876 CACNA1DB, CACNA1D coding downstream 164972 302983 ~ 358292 (+)
CI01000050_00376389_00376735 NA coding downstream 238206 376217 ~ 376964 (+)
G211975 NA non-coding upstream 40993 25140 ~ 41611 (+)
G212136 NA non-coding downstream 133047 271058 ~ 271265 (+)
G212141 NA non-coding downstream 144476 282487 ~ 282748 (+)
G212076 NA non-coding downstream 145008 283019 ~ 283265 (+)
G212143 NA non-coding downstream 158445 296456 ~ 296698 (+)
G212185 NA non-coding downstream 297226 435237 ~ 435512 (+)
G212184 NA other downstream 295673 433684 ~ 434206 (+)
CI01000050_01296683_01297763 SELENOK other downstream 1158635 1296365 ~ 1298255 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other downstream 1553792 1691374 ~ 1698973 (+)
G212927 NA other downstream 2636828 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 2704808 2852118 ~ 2865822 (+)

Expression


Co-expression Network