Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU240505 |
| length | 969 |
| RNA type | TUCP |
| GC content | 0.47 |
| exon number | 5 |
| gene id | G212006 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000050 |
| NCBI id | null |
| chromosome length | 7556436 |
| location | 82604 ~ 138011 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU240471 | lncRNA | upstream | 40993 | 25140 ~ 41611 (+) | True | G211975 |
| TU240646 | lncRNA | downstream | 133047 | 271058 ~ 271265 (+) | True | G212136 |
| TU240662 | lncRNA | downstream | 144476 | 282487 ~ 282748 (+) | True | G212141 |
| TU240581 | lncRNA | downstream | 145008 | 283019 ~ 283265 (+) | True | G212076 |
| TU240664 | lncRNA | downstream | 158445 | 296456 ~ 296698 (+) | True | G212143 |
| TU240706 | lncRNA | downstream | 297226 | 435237 ~ 435512 (+) | True | G212185 |
| CI01000050_00068652_00068867.mRNA | mRNA | upstream | 13261 | 68652 ~ 69343 (+) | True | CI01000050_00068652_00068867 |
| CI01000050_00012155_00026251.mRNA | mRNA | upstream | 56353 | 12079 ~ 26251 (+) | False | CI01000050_00012155_00026251 |
| CI01000050_00000004_00000459.mRNA | mRNA | upstream | 81999 | 4 ~ 605 (+) | True | CI01000050_00000004_00000459 |
| CI01000050_00148346_00149410.mRNA | mRNA | downstream | 10209 | 148220 ~ 149781 (+) | True | CI01000050_00148346_00149410 |
| CI01000050_00235034_00262436.mRNA | mRNA | downstream | 97023 | 235034 ~ 263619 (+) | True | CI01000050_00235034_00262436 |
| CI01000050_00274836_00275609.mRNA | mRNA | downstream | 136684 | 274695 ~ 276437 (+) | True | CI01000050_00274836_00275609 |
| CI01000050_00302983_00357876.mRNA | mRNA | downstream | 164972 | 302983 ~ 358292 (+) | True | CI01000050_00302983_00357876 |
| CI01000050_00376389_00376735.mRNA | mRNA | downstream | 238206 | 376217 ~ 376964 (+) | True | CI01000050_00376389_00376735 |
| TU240463 | other | upstream | 56192 | 22484 ~ 26412 (+) | True | CI01000050_00012155_00026251 |
| TU240705 | other | downstream | 295673 | 433684 ~ 434206 (+) | True | G212184 |
| TU240937 | other | downstream | 1158635 | 1299364 ~ 1299606 (+) | True | G212403 |
| TU240958 | other | downstream | 1553792 | 1691803 ~ 1697408 (+) | False | CI01000050_01691894_01697791 |
| TU241491 | other | downstream | 2636828 | 2774839 ~ 2775133 (+) | True | G212927 |
| TU241503 | other | downstream | 2704808 | 2842819 ~ 2843139 (+) | True | G212938 |
