RNA id: TU240463


Basic Information

Item Value
RNA id TU240463
length 796
RNA type TUCP
GC content 0.48
exon number 3
gene id CI01000050_00012155_00026251
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 12079 ~ 26412 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTGCAAAACCTTCTTTCATTCTGTGTTGCAGGTACTGGCTCCCAAGCATTACCACCGATATGGCCAGATCTTTTGTATATGCTGCCATGCACAAATGTGATTTGACAGATGATGAAAAACTTTCAAGGCCAGCTGAGCCCAAATGGATGAATGCAAACACAGCTTTTCACTTGCTGAAGATGTCACATCCAGTAACGGTGCATGCAACTCTTCCGGAAAAAGCTGCACGAATGCGAATCTCAAGGAAATATGAGAGCCATTGCCTCTCGCTCTGGTGCGCGAATCAAAAGAAACTCCGTGTGGGTCTTGTGCTTGATACTTTTGGCCTACGTCAGCCATCTGAGAGAAAAGTACACAGCTGGATTGAGAAGCAGGGATGGATGGAGAACGTACCAGATGCTGCTGAACTTGTGAAGGACTGGAAGCCTCCACGAACCATCCAGGCAGCAACAGACAGCAAATACATCCGAAGGATGAGCCGCAAGCAGTGCTGGAAAGGACTGCAGGTGATGGACATAGAAGGCAAGGGTCCCAGGGTCGTCACCACCAGGCCGTTTGCTTGCGGTGAAGTGATCTGTGACTACCACGGCCGGCTGATCTCCAGGGAGGAGGGACTGGAAATCTACCAGAACAGTGAGGGAGAAGCTGGACATTTGTTTTTCTTTACAGACAAAAATGGACAGCTCATGTGTTTGGATGCTCACGAGGAGCACTGCGAGTGCCATCCAGACAAAACTACGTTTGGAAGACAAATTAAACATTCTGCCAAACGGGCCAATCTCAGTCCTAGNNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240519 lncRNA downstream 79653 106065 ~ 139406 (+) False G212017
TU240520 lncRNA downstream 79653 106065 ~ 189607 (+) True G212017
TU240646 lncRNA downstream 244646 271058 ~ 271265 (+) True G212136
TU240662 lncRNA downstream 256075 282487 ~ 282748 (+) True G212141
TU240581 lncRNA downstream 256607 283019 ~ 283265 (+) True G212076
CI01000050_00000004_00000459.mRNA mRNA upstream 21879 4 ~ 605 (+) True CI01000050_00000004_00000459
CI01000050_00068652_00068867.mRNA mRNA downstream 42240 68652 ~ 69343 (+) True CI01000050_00068652_00068867
CI01000050_00148346_00149410.mRNA mRNA downstream 121808 148220 ~ 149781 (+) True CI01000050_00148346_00149410
CI01000050_00235034_00262436.mRNA mRNA downstream 208622 235034 ~ 263619 (+) True CI01000050_00235034_00262436
CI01000050_00274836_00275609.mRNA mRNA downstream 248283 274695 ~ 276437 (+) True CI01000050_00274836_00275609
CI01000050_00302983_00357876.mRNA mRNA downstream 276571 302983 ~ 358292 (+) True CI01000050_00302983_00357876
TU240505 other downstream 56192 82604 ~ 138011 (+) True G212006
TU240705 other downstream 407272 433684 ~ 434206 (+) True G212184
TU240937 other downstream 1270234 1299364 ~ 1299606 (+) True G212403
TU240958 other downstream 1665391 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU241491 other downstream 2748427 2774839 ~ 2775133 (+) True G212927

Expression Profile