CI01000050_00148346_00149410 (RHO)


Basic Information

Item Value
gene id CI01000050_00148346_00149410
gene name RHO
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 148220 ~ 149781 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_00148346_00149410.mRNA
CTATAAAGCGGGGTGCATGAACGCCCCATCAAGTTGTAGCACGGTCCTGCCTCGTTTCTCTACATTCCTGCCAAGCCATCCAAAGACTACCGCAGAAGGGGCTGACCACAACACTCAACCGCAGCCATGAACGGTACAGAGGGACCGGCATTCTACGTGCCTATGTCCAATGAGACTGGCGTTGTTAGGAGCCCGTACGATTATCCCCAGTACTACCTGGTGGCACCATGGGCGTTTGGTTGCCTGGCCGCTTACATGTTCTTCCTCATTCTCACCGGCTTCCCCATCAATTTCCTCACTCTGTATGTCACCCTCGAGCACAAGAAGCTGCGTACACCCCTCAACTACAGTCTGCTGAACCTCGCCGTTGCCGATCTCTTCATGGTGTTCGGTGGCTTCACCACAACGATGTACACCTCGTTGCATGGCTACTTCGTGTTCGGACGCCTCGGGTGCAACCTCGAAGGCTTCTTCGCGACACTGGGTGGTGAAATGGCGCTCTGGTCCATTGTCACACTGGCCATTGAGAGGTGGCTCGTCGTCTGTAAGCCCATCAGCAACTTCCGCTTCGGAGAGAACCACGCCATCATCGGCGTCATCTTCACATGGGTCATGGCCTGCTCCTGCGCCGTGCCTCCCCTGCTCGGCTGGTCCCGTTACATCCCCGAGGGCATGCAGTGCTCGTGCGGAGTCGACTACTACACTCGTGCCGAGGGCTACAACAACGAGTCCTTCGTCATCTACATGTTCACTGTCCACGCCTGCATTCCCTTCTGTGTCATCTTCTTCTGCTACGGTCGTCTCGTCTGCGCCGTCAAAGATGCCGCTGCCCAGCAGCAGGAGTCCGAGACCACGCAGAGGGCTGAGCGTGAGGTCACCCGCATGGTCATCCTCATGGGCTTCGCCTACTTGGTTTGTTGGCTCCCCTATGCCAGTACGGCCTGGTACATCTTCACCCACAAGGGAGCCAATTTTGGGCCTGTCCTCATGACAGTACCAGCCTTCTTTGCCAAGACCTCTGCTGTCTACAACCCGGTCATCTACATCTGCATGAACAAGCAGTTCCGTCACTGCATGATCACCACCCTGTGCTGCGGCAAGAACCCCTTCGAGGATGAAGAGGGCGCCTCCACTACTGCGTCCAAGACCGAGGCTTCGTCCGTGTCTTCCAGCTCCGTGTCCCCGGCGTAAACATGAGCACACGACACACTCTAAGCAGCGACGTGCACTGGGCTTCGACGGCAACCGACACAGAGACCACGAAGTGTTCAGCCCAGGGAAACGAGCGACCGCTACCACTTGCAGAAAAAATTGTCTGTCAGTTTTCCTTTTTGTATTTTTACAAAACCCAATTGGTTCAACCAAAAGACAGTTTTGAGAGAGGACAGACCATGTCCCAGTTTCAGTACATCCAGCGAGTCCAGCGTAATGGTGCATAAGATTCTTTTTATTTTTCTTCCTAAAATGCTGCAAAAGGAAAAATATCTTAACTCTCTTACTGTTGGACTCCTTATACTGGCTTTGTTGTGATTGTAGAGGCATGTATTCAAGGCAACGTAACA

Function

symbol description
rho Enables G protein-coupled photoreceptor activity and retinal binding activity. Acts upstream of or within absorption of visible light. Located in photoreceptor outer segment. Is expressed in several structures, including digestive system; endocrine system; photoreceptor cell; presumptive neural retina; and visual system. Used to study retinitis pigmentosa. Human ortholog(s) of this gene implicated in congenital stationary night blindness autosomal dominant 1; fundus albipunctatus; night blindness; retinitis pigmentosa; and retinitis pigmentosa 4. Orthologous to human RHO (rhodopsin).

NR:

description
rod opsin

GO:

id name namespace
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG:

id description
K04250 RHO, OPN2; rhodopsin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_00148346_00149410.mRNA True 1562 mRNA 0.54 1 148220 149781

Neighbor

gene id symbol gene type direction distance location
CI01000050_00068652_00068867 NA coding upstream 78877 68652 ~ 69343 (+)
CI01000050_00012155_00026251 NA coding upstream 121969 12079 ~ 26412 (+)
CI01000050_00000004_00000459 NA coding upstream 147615 4 ~ 605 (+)
CI01000050_00235034_00262436 NA coding downstream 85253 235034 ~ 263619 (+)
CI01000050_00274836_00275609 NA coding downstream 124914 274695 ~ 276437 (+)
CI01000050_00302983_00357876 CACNA1DB, CACNA1D coding downstream 153202 302983 ~ 358292 (+)
CI01000050_00376389_00376735 NA coding downstream 226436 376217 ~ 376964 (+)
CI01000050_00449181_00451580 NA coding downstream 299400 449181 ~ 452047 (+)
G211975 NA non-coding upstream 106609 25140 ~ 41611 (+)
G212136 NA non-coding downstream 121277 271058 ~ 271265 (+)
G212141 NA non-coding downstream 132706 282487 ~ 282748 (+)
G212076 NA non-coding downstream 133238 283019 ~ 283265 (+)
G212143 NA non-coding downstream 146675 296456 ~ 296698 (+)
G212185 NA non-coding downstream 285456 435237 ~ 435512 (+)
G212006 NA other upstream 10209 82604 ~ 138011 (+)
G212184 NA other downstream 283903 433684 ~ 434206 (+)
CI01000050_01296683_01297763 SELENOK other downstream 1146865 1296365 ~ 1298255 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other downstream 1542022 1691374 ~ 1698973 (+)
G212927 NA other downstream 2625058 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 2693038 2852118 ~ 2865822 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036831 rho coding NC_007119.7 CM002892.2 54076195 ~ 54077740 (-)