CI01000050_00302983_00357876 (CACNA1DB, CACNA1D)


Basic Information

Item Value
gene id CI01000050_00302983_00357876
gene name CACNA1DB, CACNA1D
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 302983 ~ 358292 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_00302983_00357876.mRNA
GGGCAAACTATGCCAGTGGCAGCAGAGCCTCTGTCTCCAGTGAAGCCCCGCCCACCTGGACAGAAGGGCCGTCAATCACCAGCCATCACTCTCCGGCCCGGGCCGCCGCTCTCTCCTGGCAGGCAGCGATTAACGCCGCAAGACAATCTCAGGGTGTCCCAAAGACCACAAACTCCTCCGCGCCTGCGAGCGTTGCTCCGGTCAGCTCTCTGGCCCAGAGGAAACGGCAACAATACGCCAAAAGCAAGAAACAGGGAAGCATCACTAATAGCAGACCTCCAAGAGCACTTTTCTGCCTGACTCTCAATAACCCTGTGCGCAGAGCCTGCATTAACCTAGTGGAGTGGAAACCTTTTGATATCTTTATACTGCTGTCAATTTTTGCCAACTGTGTGGCCTTAGCTGTTTACATCCCCTTTCCTGAAGACGATTCCAACTCAACTAATCATGATTTGGAAACGGTAGAATATGCCTTCCTGATCATTTTCACGATTGAAACCTTCCTCAAGATCATCGCTTATGGACTGGTGATGCACCAGAACTCCTATGTGAGAAACGGGTGGAATATGTTGGATTTTGTCATCGTCATTGTTGGTCTCTTCAGTGTTGTGCTGGAGCTGATAACCAAAGATCGAGATGTCAGCGGGCAGACAGGCGGAAAGCCGGGCGGCTTCGATGTCAAGGCTTTACGAGCGTTCAGAGTTCTGCGGCCCCTCCGTCTGGTCTCAGGAGTACCAAGTCATGGGCGTCACTGCCCTCTCAACGGCACCGTGTGTAGGGACGGCTGGCACGGGCCCAACAACGGCATCACAAACTTTGACAACTTCCTGTTTGCCATGCTGACGGTGTTCCAGTGTATCACCATGGAGGGCTGGACTGATGTGCTGTACTGGATGAATGATGCCATGGGCTTTGAGTTGCCTTGGGTATATTTTGTCAGTCTGGTCATTTTCGGCTCCTTCTTTGTCCTCAATCTAGTACTGGGAGTTCTCAGTGGAGAGTTCTCTAAGGAGCGCGAGAAGGCCAAGGCTCGTGGAGATTTCCAGAAACTGCGTGAGAAGCAGCAGCTTGAAGAGGATCTGAAGGGATATCTGGATTGGATCACACAAGCTGAGGACATCGACCCTGATAATGATGAAGGGGGAGATCAGGAGGCCAAACGCAACCGCTACCACCTTGATGTTGCCGCTCCTCCAAGGTGGAGCCTACATCCTTTACTCATGAAGGAAGGCAAACAAGAGCAGGACATAATTTTGCAGTTGCCCTATCTCCCAGGCTCTAAAAAACCCCAAGGAACTGCAGGGGAGCTTAGGTGTTCTTTGTTCTTTATCAGATCTATTCAGTCTGCTAAATATAATGAACTGAGTAACAGGCTAATAGCAAGTAATCCCATCAGTGAGACCGAATCTGTGAACACAGAGAACCCAGAAGAGAGTGAGAAGATCCTCTGCTGCGGGCGCGTCTGTCAGAAATTGACGAAGTCGAAATTCAGCCGCTGGCGTTGCTGGAACAGGTTTTGTCGCAGGAAGTGCCGAGCTGTGGTGAAATCCACCGTCTTCTATTGGCTGGTGATTCTGCTGGTGTTCCTGAACACACTCACGATATCATCCGAGCATTATAACCAGCCCGACTGGCTCACGGAGGTCCAGGATGTGGCTAATAAGGTGTTGTTAGCCCTGTTCACATGTGAGATGCTGATCAAAATGTACAGTCTGGGGCTCCAGGCATACTTTGTGTCGCTCTTCAACCGCTTCGACTGCTTCGTAGTGTGCGGAGGCATCGTGGAGACGATCCTCGTGGAGCTGGAGATCATGTCTCCTCTCGGCATCTCCGTGTTCCGCTGCGTCCGGCTCCTCAGGATCTTTAAAGTCACGCGTCACTGGGCGTCTCTGAGTAATCTAGTGGCGTCTCTGTTGAACTCCATGAAGTCCATTGCGTCCCTGTTGCTGTTGCTCTTCCTCTTCATCATCATCTTCAGTTTGCTCGGCATGCAGCTCTTCGGTGGCAAGTTCAACTTTGACGAGACTGTTACCAAACGAAGCACTTTTGACAACTTCCCTCAAGCCCTGCTGACTATCCTGACAGGTGAGGACTGGAATACAGTGATGTATGATGGGATCATGGCGTATGGAGGCCCTTCTTCCTCGGGCATGCTCGTGTGCATCTACTTCATCATCCTCTTCATCTACATCTTACTGAACGTCTTCTTGGCCATTGCTGTGGATAACCTGGCAGACGCTGAAAGTCTGAACTCTGCCCAGAAAGAGGAGGAGAAGAGGAACAAGAGGAGGAAGAGCAGGAGTATGAGCATATTCAAGAGAGATGGTGACGATGGAAACTTTAAGGCGTCTGGTGATCAGGAGGCTGATCAGGATCTGGATGAGGACATGATTGACTCCTCAGAGGAGGATGAGGAAGAAGAGCCCGAGGTGCCATCAAGGCCGAGGCCACAGAGACTGTCAGAGCTGAGCCTCAGGGAAAAGATGCCACCTATCCCAGAGGGAAGCGCCTTCTTCATCTTTAGCAACTCCAACCCGATCCGTGTGGCGTGCCATCGGCTCATCAATCATCAGATCTTCACCAACCTCATCCTCATCTTCATCATGCTGAGCTCCGTCTCGCTGGCAGCCGAGGACCCCATCCGTAACTTCTCTGCCAGAAACATCGTTCTCGGTTATCTTGACTATGCCTTCACCGCTATATTTGCAGTGGAGATCTTATTGAAGATGACAGCGTTTGGTGCTTTCCTTCATAAAGGGGCTTTCTGCAGAAATTACTTTAATTTGCTGGATCTGCTGGTGGTTGGAGTCTCTCTCGTTTCCTTCGGCATACAATCTTCGGCCATTTCAGTGGTGAAGATTTTAAGGATTCTGCGTGTGCTTCGACCTCTGAGAGCCATCAACAGAGCCAAAGGACTCAAACATGTGGTTCAGTGTGTGTTTGTGGCCATCAGGACGATTGGGAACATCATGATCGTCACCACACTTCTTCAGTTCATGTTTGCCTGCATCGGTGTGCAGTTGTTCAAGGGGAAGTTCTACCGCTGTAGCGATGATGCAAAGACAAGTCCAGAGGACTGCAAAGGGACGTATATCGTGTACAGTATCGGTGAGACGGCACTGCCACAAGTGCGAGAGAGGATCTGGTTCAACAGCGACTTTAACTTTGATAATGTGCTGATGGCTATGATGGCCCTCTTCACTGTCTCAACGTTTGAAGGCTGGCCAGCCCTGCTGTACAAGGCCATCGACTCAAGCAAGGAAAACATGGGCCCCATTTACAACTACCGTCGTCAGTGTGTGGAGTACGCTCTGAAAGCCCGTCCGCTGAGGAGATACATCCCCAAAAACCCCCACCAGTACAAGTTCTGGTATGTGGTGAACTCCACCGGCTTTGAGTACGTCATGTTTGTGCTCATCGTGCTCAACACACTGTGTCTGGCGGTTCAGCATCACGGCCAGTCACGTCTTTTCAATTATGCGATGGACATTTTGAACATGGTGTTCACGGGGGTCTTCGCAGTTGAAATGATTCTCAAACTGGTTGCCTTCAAACCGAAGGGTTATTGTGTGGATCCCTGGAATGGGTTTGATGCTCTGGTGGTGGTTGGCAGCATAGTAGACATCGTTCTGAGTCAGCACTATTTTGCCGATGCATGGAACACGTTTGATGCCTTAATTGTTGTTGGTAGCATCGTTGACATTGCGATCACAGAGATCAATAACACAGAGGACAGCGCAAGGATTTCCATCACCTTCTTCCGTCTGTTTCGAGTCATGCGCTTAGTGAAGTTGTTGAGCAGAGGAGAGGGCATTCGCACGCTCTTATGGACCTTCATCAAGTCATTTCAGGCTCTTCCGTACGTGGCTCTGCTCATCGCCATGCTGTTCTTCATCTATGCTGTCATTGGAATGCAGGTGTTCGGGAAGGTCGCGATGGTGGATGGAACCAGCATTAATCGTAACAATAATTTCCAGACCTTTCCACAAGCTGTGCTCCTGCTGTTCAGGTGTGCGACGGGTGAGGCGTGGCAGCAGATCATGTTGGCGTGTCTGCCTGGCAAACAGTGTGACTCTGAGTCCGACTATAACCCTGGAGAGGAAAAAACCTGCGGCAGCTCCTTCGCCATCCTCTACTTCATCAGCTTCTACATGCTCTGTGCTTTCCTGATCATTAATTTGTTTGTCGCTGTCATCATGGACAACTTTGACTACCTGACGCGTGATTGGTCGATTCTTGGACCGCATCATTTAGATGAATTCAAGAGGATCTGGTCGGAATATGATCCAGAGGCCAAGGGTCGTATCAAACACTTAGATGTGGTGACGCTGCTGCGCAGGATTCAGCCGCCGCTGGGCTTTGGCAAGCTGTGTCCTCATAGAGTGGCATGCAAGAGGTTGGTTGCCATGAATATGCCACTAAATAGTGACGGGACGGTCATGTTCAACGCCACCCTGTTCGCTCTGGTCAGAACTGCTCTGAAAATCAAGACTGAAGGCAATCTGGAACAAGCCAACGAGGAGTTACGAGCCGTCATCAAGAAGATCTGGAAGAGAACCAGCATGAAACTGCTGGACCAAGTGGTGCCACCTGCTGGAGATGATGAAATCACTGTTGGGAAGTTCTATGCCACTTTCCTGATACAAGACTACTTCAGGAAGTTCAGGAAACGCAAAGAGCAAGGACTTGTGGGAGGCCAACCGCTTTTCAACACCACCACCGCTCTGCAGGCTGGTCTGCGCACACTGCATGATATCGGCCCTGAGATCCGTCGAGCCATATCATGTGATCTACAGGATGAAGGTCTAGTGGACGTCAACCTCCACGAGGAGGAAGAGATATACGGGGTAGAGCCATTCAGTCTCTCTCAGAGTTCTTCAAGGAATGGAGTTGTGTTTGGGAGTCTGGTCAATCATGTGAGTGGAGATCAGTACGGCAGCAGCGTTACCCAGCGTCCTCTGCAGCTCCCGCTCCCTCTGTGCTCCACACAGAGTTACTGTCAGTCCATGTCAGACAGCAGATCGTCCAACTCGAATATCAACAATGCCAACGTGCCAGCGGCCCCCGTCTTCACAAACGGCTGGCACAGTCGCTGCCGCCGGCCCTCCAGGGGCCTGGTGTCCTCTCTGAGCTCCTACCTCAACCTCAGGAGTGATGGAGAGCTACAGCTCAGGACTCACTCCAAGAGGCCTTGCTCCAGTGCTGTCGGATATCCCACTATCCACGTCCAAAACCCCAGCCATGGTGACATCAGCGATGATGACAGGAACTCTGTTACGGAGTATTACAGCGGAGACGAGTTTCACGAGGATGACGTCATGCTGGCTAGAGACAGGTCGTACAAAGACTTTCAGGACACTTTGAGTGACTGTGCTGCAGTTAGACCACAGGATGTGTGCGAATGTGTCTGTGACGATGATGAGCAGCTCATATCCCAGCAGCCCCAGAGGTCGTCAAAGCGACTCCTGCTGTCCCCGGCTCAATCCTCTCACAAGCCCGCTTTCCATTTCGAGTGTCTGCGCAAACAGAGCAGTCAAGATGAGATTCCCCTGCATCCCGCGGGTCTCCCGCCGCAGCATCAGGTGAAAACGGCGACCGGTCAAGAATCGAGTCGAGCCCGGCTCTCTCCGACTCGCTCCATCCGCTCATGGGTCACGCCTCCGGCCACGCCTCCACCCTACACCCCTCTGATCCAGACCGCGCCCAGCGCCAGCAGCACTCCGGGATTGGTTCACAGGGGCTTCTGGAACTCCCAGCAAGGCTCTGATTGGTCAGCACGTGCCCCCTCTCTCTTGAAGGTTCCACCGCGGTTGAGCGGCCATCACCTGCAGCAGCGGAGCAGCGCTCACAGCCTGGTGGAAGCGGTGATGATATCTGGGGGATTGGGCAAATACGCGAAGGATCCAAAGTTTGTGACGGTGACAAAACAAGAGATTGCCGATGCTTGTGAAATGACAATTGATGAGATGGAAAGTGCTGCTAGCAACTTACTGAACGTCACGCTTGGCCACGGGCCGGAGGCAGAGGAGACGGGCTTGTGTCAGAGCAACATCCGCGACTACAGCGATGAGGAGACGGACTCGAGCAGCAGACGCGAGGAGGATCTCACCGACGAAATGATCTACGTCTCAGTATTATAGTAAAGAACTCAAAAAACCCCAACAAAACTAAATCACGTAGAAATATGAGTGAATAAGGTTACTGTGCCTTTAAACGGGAGTGTCTGTTGGCTTACTTGGACCGAACGCTTTACGCTTATGCATTTGGATCTTTTCATTTAGTTAGCAACCTTGTCTTGGGAAATTTCCAGCAAGATCCAAATGTGATGACATCCTCAGCCCAAGTGTTTTCCTCTGAATCTATGCATGGACTGGACAGTGGCTCTAACTAACCAGCCAAAGTCCACCTGGTCAAAGCTACTGAACAGACCCATTCAGGACACGTTTACCGTTCGAGTTGAGAATTGTACTCACATATATGAAGCAATTACAATAGTAAAAGCTTCACAGCAATACCTCCTGGTTGGATGACTGAACTATATTCCAAGTCTTTCGAA

Function

symbol description
cacna1db Predicted to enable high voltage-gated calcium channel activity. Predicted to be involved in calcium ion import. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in atrium and cardiac ventricle. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human CACNA1D (calcium voltage-gated channel subunit alpha1 D).
cacna1d Enables alpha-actinin binding activity and voltage-gated calcium channel activity involved SA node cell action potential. Contributes to high voltage-gated calcium channel activity. Involved in several processes, including cardiac conduction; cardiac muscle cell action potential involved in contraction; and sensory perception of sound. Part of L-type voltage-gated calcium channel complex. Implicated in type 2 diabetes mellitus. Biomarker of type 2 diabetes mellitus.

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K04851 CACNA1D, CAV1.3; voltage-dependent calcium channel L type alpha-1D

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_00302983_00357876.mRNA True 6556 mRNA 0.51 48 302983 358292

Neighbor

gene id symbol gene type direction distance location
CI01000050_00274836_00275609 NA coding upstream 26546 274695 ~ 276437 (+)
CI01000050_00235034_00262436 NA coding upstream 39364 235034 ~ 263619 (+)
CI01000050_00148346_00149410 RHO coding upstream 153202 148220 ~ 149781 (+)
CI01000050_00068652_00068867 NA coding upstream 233640 68652 ~ 69343 (+)
CI01000050_00012155_00026251 NA coding upstream 276732 12079 ~ 26412 (+)
CI01000050_00376389_00376735 NA coding downstream 17925 376217 ~ 376964 (+)
CI01000050_00449181_00451580 NA coding downstream 90889 449181 ~ 452047 (+)
CI01000050_00457216_00463632 NA coding downstream 98638 456930 ~ 463646 (+)
CI01000050_00615170_00641706 NA coding downstream 256878 615170 ~ 641774 (+)
CI01000050_00648100_00653861 NA coding downstream 289808 648100 ~ 653873 (+)
G212143 NA non-coding upstream 6285 296456 ~ 296698 (+)
G212076 NA non-coding upstream 19718 283019 ~ 283265 (+)
G212141 NA non-coding upstream 20235 282487 ~ 282748 (+)
G212136 NA non-coding upstream 31718 271058 ~ 271265 (+)
G212017 NA non-coding upstream 113376 106065 ~ 189607 (+)
G212185 NA non-coding downstream 76945 435237 ~ 435512 (+)
G212190 NA non-coding downstream 107411 465703 ~ 466360 (+)
G212188 NA non-coding downstream 108302 466594 ~ 467370 (+)
G212225 NA non-coding downstream 172439 530731 ~ 530950 (+)
G212226 NA non-coding downstream 172686 530978 ~ 531182 (+)
G212006 NA other upstream 164972 82604 ~ 138011 (+)
G212184 NA other downstream 75392 433684 ~ 434206 (+)
CI01000050_01296683_01297763 SELENOK other downstream 938354 1296365 ~ 1298255 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other downstream 1333511 1691374 ~ 1698973 (+)
G212927 NA other downstream 2416547 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 2484527 2852118 ~ 2865822 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036075 cacna1db coding NC_007119.7 CM002892.2 53423408 ~ 53436880 (+)
bowfin (Amia calva) AMCG00006895 LOC107732972 coding CM030134.1 CM030134.1 24684008 ~ 24715289 (-)