CI01000050_00012155_00026251


Basic Information

Item Value
gene id CI01000050_00012155_00026251
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 12079 ~ 26412 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_00012155_00026251.mRNA
GTATAAAAGACAGCTGTGATAAATGTTTGCCTCAGTGCAATGGCTTATCTTGCATTATTGGAAGACTTGGCAAACAATGCACTCCACAGAGAGCGCGTTTTCCAAGATCGTGCTGATCTGCTTGGCGAAAGCTCTCTTTGCCATTATTACGTCTCTGAATGAACTTTCATACTCCTTCTGGAAAAAAGGATATTTGAACCTTGAAATGGCTTCTGAGAGGGTTCTTTCACCAGACCAGTGCTGGGCAATCTTGCAATCTGCTGAAGATGACTTCTTGATAATCATCGCTAACTTAATGATTGATGTCAGATCTATGACAAGAGAAGAAGAGCAGCTGGTGGTGCATTTCCTGGAGGCCATGGTGATGCTGCTGTACCTCCAAAAGCCAGAAGTGGTGAAGAATATGACTGTTTCTGATTGGCTGAACCGGACATACATTGAGGGAAATCATGAACGAACTATGGTGGAAGTAGACAAGTGCAATGCCTTCTTTGTTATGGCAAATCAAGAGGAAGTGGTACTGGCTCCCAAGCATTACCACCGATATGGCCAGATCTTTTGTATATGCTGCCATGCACAAATGCCAGCTGAGCCCAAATGGATGAATGCAAACACAGCTTTTCACTTGCTGAAGATGTCACATCCAGTAACGGTGCATGCAACTCTTCCGGAAAAAGCTGCACGAATGCGAATCTCAAGGAAATATGAGAGCCATTGCCTCTCGCTCTGGTGCGCGAATCAAAAGAAACTCCGTGTGGGTCTTGTGCTTGATACTTTTGGCCTACGTCAGCCATCTGAGAGAAAAGTACACAGCTGGATTGAGAAGCAGGGATGGATGGAGAACGTACCAGATGCTGCTGAACTTGTGAAGGACTGGAAGCCTCCACGAACCATCCAGGCAGCAACAGACAGCAAATACATCCGAAGGATGAGCCGCAAGCAGTGCTGGAAAGGACTGCAGGTGATGGACATAGAAGGCAAGGGTCCCAGGGTCGTCACCACCAGGCCGTTTGCTTGCGGTGAAGTGATCTGTGACTACCACGGCCGGCTGATCTCCAGGGAGGAGGGACTGGAAATCTACCAGAACA
>TU240463
TTTTGCAAAACCTTCTTTCATTCTGTGTTGCAGGTACTGGCTCCCAAGCATTACCACCGATATGGCCAGATCTTTTGTATATGCTGCCATGCACAAATGTGATTTGACAGATGATGAAAAACTTTCAAGGCCAGCTGAGCCCAAATGGATGAATGCAAACACAGCTTTTCACTTGCTGAAGATGTCACATCCAGTAACGGTGCATGCAACTCTTCCGGAAAAAGCTGCACGAATGCGAATCTCAAGGAAATATGAGAGCCATTGCCTCTCGCTCTGGTGCGCGAATCAAAAGAAACTCCGTGTGGGTCTTGTGCTTGATACTTTTGGCCTACGTCAGCCATCTGAGAGAAAAGTACACAGCTGGATTGAGAAGCAGGGATGGATGGAGAACGTACCAGATGCTGCTGAACTTGTGAAGGACTGGAAGCCTCCACGAACCATCCAGGCAGCAACAGACAGCAAATACATCCGAAGGATGAGCCGCAAGCAGTGCTGGAAAGGACTGCAGGTGATGGACATAGAAGGCAAGGGTCCCAGGGTCGTCACCACCAGGCCGTTTGCTTGCGGTGAAGTGATCTGTGACTACCACGGCCGGCTGATCTCCAGGGAGGAGGGACTGGAAATCTACCAGAACAGTGAGGGAGAAGCTGGACATTTGTTTTTCTTTACAGACAAAAATGGACAGCTCATGTGTTTGGATGCTCACGAGGAGCACTGCGAGTGCCATCCAGACAAAACTACGTTTGGAAGACAAATTAAACATTCTGCCAAACGGGCCAATCTCAGTCCTAGNNNN

Function

NR:

description
SET domain containing 8c, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_00012155_00026251.mRNA False 1088 mRNA 0.47 7 12079 26251
TU240463 True 796 TUCP 0.48 3 22484 26412

Neighbor

gene id symbol gene type direction distance location
CI01000050_00000004_00000459 NA coding upstream 11474 4 ~ 605 (+)
CI01000050_00068652_00068867 NA coding downstream 42401 68652 ~ 69343 (+)
CI01000050_00148346_00149410 RHO coding downstream 121969 148220 ~ 149781 (+)
CI01000050_00235034_00262436 NA coding downstream 208783 235034 ~ 263619 (+)
CI01000050_00274836_00275609 NA coding downstream 248444 274695 ~ 276437 (+)
CI01000050_00302983_00357876 CACNA1DB, CACNA1D coding downstream 276732 302983 ~ 358292 (+)
G212017 NA non-coding downstream 79814 106065 ~ 189607 (+)
G212136 NA non-coding downstream 244807 271058 ~ 271265 (+)
G212141 NA non-coding downstream 256236 282487 ~ 282748 (+)
G212076 NA non-coding downstream 256768 283019 ~ 283265 (+)
G212143 NA non-coding downstream 270205 296456 ~ 296698 (+)
G212006 NA other downstream 56353 82604 ~ 138011 (+)
G212184 NA other downstream 407433 433684 ~ 434206 (+)
CI01000050_01296683_01297763 SELENOK other downstream 1270395 1296365 ~ 1298255 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other downstream 1665552 1691374 ~ 1698973 (+)
G212927 NA other downstream 2748588 2774839 ~ 2775133 (+)

Expression


Co-expression Network