CI01000050_00449181_00451580


Basic Information

Item Value
gene id CI01000050_00449181_00451580
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 449181 ~ 452047 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_00449181_00451580.mRNA
GCTCAACCCCGCACTGCACGCGTCATGACGGGGGCGAGCGCGCCTATATAAAACACTCGTGCGACATTCACGCTCCACTCACTGACCTCGGCCTGAACGGGTCAGCACATCAGAGGCTCGAGGAACGCTACATCTGCAGTTTCCATCAGCAACAGATTTTCTGCAACAGGCTACAAGTGAATAACTATCCACTGCAGGACAGAGGTTGTCATGAGGGCGGCGTGTGTGATCATCTTGGCCTCTCTGACGGTGTTCCTGTCACCCGGTCTCCAGTGTCAGGCTCTGCCGGATGGAGGACGAGAACAACGACAACGGTGTCTGCTTACACTCACTCTCAGTGTCGAAAAATACTAGATAGGGACTTTCAAAATAGCAAAAGCGAGTCCCAACTGCGACATAGAGAGCAGCTCGTGTCCCCGACGGACTGGATGGAGAAGAGGCAGCACCCGGGAAAGAGACAGCATCCCGGCAAGCGCGAGGACGCGGACTACGAAGACGACGCTCCTGCTCTCCAGAAGAGACAACATCCCGGGAAGCGCGAGGACGAAGAGAGCGAGAGGCTGAGAAGGCAGCATCCCGGGAAGCGTCTGTCTCTGGAGCAGATGATGCTGGAGGAACCCAGCGCCCAGAGCGAGCTGTCCAAACGGCAGCATCCCGGGAAACGCTACCTGATGCTGCTCCACAAGCGACAGCATCCCGGCCGGCGCGAGCTGCACGAGGCAGCGGCAGCGGGAGACTTTTCGGACCTAGCGAAGCGTCAGCATCCCGGGAAGAGACTGTGCGAGGACTGGGACGAGGCGGGCTGTGATCAAGCCAGCATCCTGCTCGAGCTTCTGGACAAAAGTCGCGCGGAGGAGAAGCGACAACATCCCGGGAAACGGGAGTTAGAGGACGATCTGACGGAGCAAGAGTAACTGTGAAGTTGTTAAAGCGGATGAATAAGTGTGTGTGCGTTGATTTCCATGGAAAACGCGCCTGTCTCCATGTGTTTACTGCGTTTCTCATGTCGTTAAAGCAAGAGAGGGTGTTTTCGGAGGGAAAACACTAAACCTCATTTAACTCTGCGTCTCGTTTTTCGTTTCTACACCAACTGTGCGCGGGAACACCTTAAAATACTATATATGTTACCGAACTAGATCCATGCTCTATTCGCATTCGGTCTGTTTTGGGAAACATTTCACTAATGCATGTGATCAGAAAACATCTCCAGCGACATTCCAGTGTAAATCCCATTTAATTTGGTTCGCAAAACAATGAAACGGGTTACCGAAATATTTTTCTACAGTAGCGTACTTCTTGCATGACCTGACCTGTACATTTTCATGATTTATTTTTGTTCTATTGATAAAGAAGAGCATATAAATGACAATGATGTTGTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_00449181_00451580.mRNA True 1381 mRNA 0.52 4 449181 452047

Neighbor

gene id symbol gene type direction distance location
CI01000050_00376389_00376735 NA coding upstream 72217 376217 ~ 376964 (+)
CI01000050_00302983_00357876 CACNA1DB, CACNA1D coding upstream 90889 302983 ~ 358292 (+)
CI01000050_00274836_00275609 NA coding upstream 172744 274695 ~ 276437 (+)
CI01000050_00235034_00262436 NA coding upstream 185562 235034 ~ 263619 (+)
CI01000050_00148346_00149410 RHO coding upstream 299400 148220 ~ 149781 (+)
CI01000050_00457216_00463632 NA coding downstream 4883 456930 ~ 463646 (+)
CI01000050_00615170_00641706 NA coding downstream 163123 615170 ~ 641774 (+)
CI01000050_00648100_00653861 NA coding downstream 196053 648100 ~ 653873 (+)
CI01000050_00678001_00716978 NA coding downstream 225852 677899 ~ 716978 (+)
CI01000050_00718711_00742201 NA coding downstream 266664 718711 ~ 742201 (+)
G212185 NA non-coding upstream 13669 435237 ~ 435512 (+)
G212143 NA non-coding upstream 152483 296456 ~ 296698 (+)
G212076 NA non-coding upstream 165916 283019 ~ 283265 (+)
G212141 NA non-coding upstream 166433 282487 ~ 282748 (+)
G212136 NA non-coding upstream 177916 271058 ~ 271265 (+)
G212190 NA non-coding downstream 13656 465703 ~ 466360 (+)
G212188 NA non-coding downstream 14547 466594 ~ 467370 (+)
G212225 NA non-coding downstream 78684 530731 ~ 530950 (+)
G212226 NA non-coding downstream 78931 530978 ~ 531182 (+)
G212230 NA non-coding downstream 82801 534848 ~ 535088 (+)
G212184 NA other upstream 14975 433684 ~ 434206 (+)
G212006 NA other upstream 311170 82604 ~ 138011 (+)
CI01000050_00012155_00026251 NA other upstream 422769 12079 ~ 26412 (+)
CI01000050_01296683_01297763 SELENOK other downstream 844599 1296365 ~ 1298255 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other downstream 1239756 1691374 ~ 1698973 (+)
G212927 NA other downstream 2322792 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 2390772 2852118 ~ 2865822 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 3353096 3805143 ~ 3808870 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036835 trh coding NC_007119.7 CM002892.2 54220551 ~ 54223316 (-)