CI01000050_00615170_00641706


Basic Information

Item Value
gene id CI01000050_00615170_00641706
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 615170 ~ 641774 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_00615170_00641706.mRNA
TCGATGGCTGCTGTCTGTCTGCTTGTGATAAAGGTCGAGTCTCTCAGCTGCTGGACAGAATGTGTAATTATAATGAGATGAAACAGCAGAATGATTTGTACCCCTGTGGATCTGTAGAGCAGCCTCAGAAAAACAAGACTCCGCCCCCTACCAGGCCATGCCCCGCCCAGCTCACAGAGAGGCCACGCCCCCATCCCTCAGCCACGCTCCAGAAGTCAAAACCACACGGAAGTCAGTTTCTCGGACAGCTGAAGTGTCTCCATCTTACTTTCTTACTCTTAACTGGCTTTCGATTGCTTGTTTGCATGCGACTGCGGAGCGATGGGAATGGAGGGGAATCTCTCGGACCCGGAGTCCCGTCAGCAGGGCCGAGTGTGGGCCGGCTCATCCAGAGCTTCCACAGCTCCAGGTTTCCGATTCTGGGTCTCCAGCAAAGGAACGACATGGATTCTCCAGCCGCAGATCAGCCTCCGGCTGCGCAGGATTCTGGGAACTTTGGCTCAGCGGATGGACTGATGTTTAAACCTAGTGAAATCTCAGAGCTTTTGGGATTGTCCGGCTCAAACTCCTTCCAAATGGACTCTGCGAAGGATGTAGAAATTGCAGAAGGACTTCAAAAAGAGCATAAAAAACATTCCAGCAGTGGACAGGAGGATAATCACGGTGAGTGTAGTGATGTGGTGGAGCCACCGCAGAGTCACGAGGGCACTGAAGCCAACGGGAAGATCCCGAATCGGGACAGCGGCATCGACAGTCCCTCATGCGGGGCGGATGGCGAGGGCTTCCCCAATGAGGACCCTATCGAGGAGGAGGACAGGAACGACAGCATCGCCACGGAAACCGAGAGCATGTCATGCGCCGCCACTGGCAACAAGCGGGACTCGACGCAGGATGAAGACAGCGACCTGGAGGAAGGGAGCGGAGAAGATCCCGAGAGCCTGGAACTCAGAGGTTTGCCATCTGACTCTCAGAAGCTGTTGAACATCGCTAAAGAGTTGCTTCAGACAGAAGAAGCGTACGTCAAAAGACTCAACCTGCTGGACCAGGTCTTCTGTGCCCGTCTGACAGAGGCTGCCATCCCTGCTGACGTCATCACAGGAATTTTCTCCAACATCTCCTGCATCCGCCTCTTTCATGAGCAGTTCCTACTGCCAGAACTACAGACACGCATCACAAAGGAGTGGAGCTGTAATCCCCGCATAGGGGACATCCTGCAGAAGTTAGCGCCGTTCCTGAAGATGTACGGCGAGTATGTGAAGAACTTCGATCGGGCCATGGAGCTGGTCAACACGTGGATGCATCACTCCACCAACTTCAAGGGTGTCGTGCATAGCATCCAGCATCACATGCTGGAGCCGGTGCAGCGTATTCCCCGTTACGAGCTCCTGCTGAAGGACTACCTGAAGAAACTGCCGGACGGAGCCGCGGACAGGAGAGACGCCGAGAATGCTCTGGAGCTCATCTCCACCGCTGCAAACCACTCCAACGCTGCCATCAGGAAAATGGAGAAGATGCACAAGCTGTTGGAGGTGTATGAGCGGTTGGGCGGAGAGGAGGACATTGTTAATCCAGCTAATGAATTCATTAAGGAAGGTCACATAAAGAAGATGTCGGCTAAGAACGGCACTGCACAGGACCGATACCTCTATCTGTTCAATAACATGGTGCTGTACTGTGTGCCCAAGCTGAGGCTGATGGGACAGAAGTTTAGCGTCAGAGAGCGGATCGACATTGCCGGGATGGAGGTACGACTTCAGCCGTTCGTTCATCTGCATGTTTATTTTTATGTCCTTATCTTATCATATGCTGATTTTCTAACATTGCTTGAAGGTTCAGGAAAACGTCAAGCAGAACGTTCCTCACGCGTTCACCATCATCGGCAAACAGCGCTCACTCGATCTGCAGGCCAGGTGATCCTGGCGACGATCGAGAAGCACAAGCAGAACAGCGAGACGTTCAAAGCTTTCAACAGCTCCTTCAGCCGTGACGACGAGCACCTGCCTGACGCAGCGGGCTTATGGAGCAGCCTGAGCACATGTGAGACGGACGGAGCTCCACACGAGCGGGCCGTCTGTGGTAAGTGTTCGAAGGTGTCAGAGAGCAAGAACATCCGCATGTGTAAGCAGTGTGATGGCCAGCAGGGTGCTGAAGGGACGGCAGGGGGCGCCACTGAGCCCAAGAAACGACTGGAGGTAAAGGTTTGGCTGAGAGAACCAGGTTCAAGAACGAGCACAAAGGCGACTCAGAAGCCGCTCTTCTCCCGCGTCACCTTCCTCTTCACGCTCTTTCACAGACGGCACACTTCCCTGTTCTCCACGCGCAGTATCACGACCGCAGCAGAAGTACTGTATGCTGAACACAGGTGGATCATGGTCAGGTGGAAACATTGCACCTGCTTCCCTTTTAATAGAGTTTGAACCCTTGAAACAGAAGCAGTATTATAAAAAGCATTTTATGTGTACAAAAGCTGTCTTATAGCATATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_00615170_00641706.mRNA True 2485 mRNA 0.53 16 615170 641774

Neighbor

gene id symbol gene type direction distance location
CI01000050_00457216_00463632 NA coding upstream 151524 456930 ~ 463646 (+)
CI01000050_00449181_00451580 NA coding upstream 163123 449181 ~ 452047 (+)
CI01000050_00376389_00376735 NA coding upstream 238206 376217 ~ 376964 (+)
CI01000050_00302983_00357876 CACNA1DB, CACNA1D coding upstream 256878 302983 ~ 358292 (+)
CI01000050_00274836_00275609 NA coding upstream 338733 274695 ~ 276437 (+)
CI01000050_00648100_00653861 NA coding downstream 6326 648100 ~ 653873 (+)
CI01000050_00678001_00716978 NA coding downstream 36125 677899 ~ 716978 (+)
CI01000050_00718711_00742201 NA coding downstream 76937 718711 ~ 742201 (+)
CI01000050_00753574_00762446 S35E2, SLC35E2B coding downstream 110600 752374 ~ 762767 (+)
CI01000050_00770066_00782851 CDK11A, CDK11B coding downstream 128292 770066 ~ 782972 (+)
G212107 NA non-coding upstream 65914 549023 ~ 549256 (+)
G212234 NA non-coding upstream 74310 540120 ~ 540860 (+)
G212230 NA non-coding upstream 80082 534848 ~ 535088 (+)
G212226 NA non-coding upstream 83988 530978 ~ 531182 (+)
G212225 NA non-coding upstream 84220 530731 ~ 530950 (+)
G212257 NA non-coding downstream 5308 647082 ~ 647287 (+)
G212113 NA non-coding downstream 16790 658564 ~ 659213 (+)
G212260 NA non-coding downstream 19840 661614 ~ 662448 (+)
G212261 NA non-coding downstream 21910 663684 ~ 664149 (+)
G212269 NA non-coding downstream 104173 745947 ~ 746578 (+)
G212184 NA other upstream 180964 433684 ~ 434206 (+)
G212006 NA other upstream 477159 82604 ~ 138011 (+)
CI01000050_00012155_00026251 NA other upstream 588758 12079 ~ 26412 (+)
CI01000050_01296683_01297763 SELENOK other downstream 654872 1296365 ~ 1298255 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other downstream 1050029 1691374 ~ 1698973 (+)
G212927 NA other downstream 2133065 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 2201045 2852118 ~ 2865822 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 3163369 3805143 ~ 3808870 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location