Gene
RNA
| Item | Value |
|---|---|
| gene id | G212257 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000050 |
| NCBI id | null |
| chromosome length | 7556436 |
| location | 647082 ~ 647287 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU240782 | True | 206 | lncRNA | 0.30 | 1 | 647082 | 647287 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000050_00615170_00641706 | NA | coding | upstream | 5308 | 615170 ~ 641774 (+) |
| CI01000050_00457216_00463632 | NA | coding | upstream | 183436 | 456930 ~ 463646 (+) |
| CI01000050_00449181_00451580 | NA | coding | upstream | 195035 | 449181 ~ 452047 (+) |
| CI01000050_00376389_00376735 | NA | coding | upstream | 270118 | 376217 ~ 376964 (+) |
| CI01000050_00302983_00357876 | CACNA1DB, CACNA1D | coding | upstream | 288790 | 302983 ~ 358292 (+) |
| CI01000050_00648100_00653861 | NA | coding | downstream | 813 | 648100 ~ 653873 (+) |
| CI01000050_00678001_00716978 | NA | coding | downstream | 30612 | 677899 ~ 716978 (+) |
| CI01000050_00718711_00742201 | NA | coding | downstream | 71424 | 718711 ~ 742201 (+) |
| CI01000050_00753574_00762446 | S35E2, SLC35E2B | coding | downstream | 105087 | 752374 ~ 762767 (+) |
| CI01000050_00770066_00782851 | CDK11A, CDK11B | coding | downstream | 122779 | 770066 ~ 782972 (+) |
| G212107 | NA | non-coding | upstream | 97826 | 549023 ~ 549256 (+) |
| G212234 | NA | non-coding | upstream | 106222 | 540120 ~ 540860 (+) |
| G212230 | NA | non-coding | upstream | 111994 | 534848 ~ 535088 (+) |
| G212226 | NA | non-coding | upstream | 115900 | 530978 ~ 531182 (+) |
| G212225 | NA | non-coding | upstream | 116132 | 530731 ~ 530950 (+) |
| G212113 | NA | non-coding | downstream | 11277 | 658564 ~ 659213 (+) |
| G212260 | NA | non-coding | downstream | 14327 | 661614 ~ 662448 (+) |
| G212261 | NA | non-coding | downstream | 16397 | 663684 ~ 664149 (+) |
| G212269 | NA | non-coding | downstream | 98660 | 745947 ~ 746578 (+) |
| G212104 | NA | non-coding | downstream | 116711 | 763998 ~ 764435 (+) |
| G212184 | NA | other | upstream | 212876 | 433684 ~ 434206 (+) |
| G212006 | NA | other | upstream | 509071 | 82604 ~ 138011 (+) |
| CI01000050_00012155_00026251 | NA | other | upstream | 620670 | 12079 ~ 26412 (+) |
| CI01000050_01296683_01297763 | SELENOK | other | downstream | 649359 | 1296365 ~ 1298255 (+) |
| CI01000050_01691894_01697791 | SULT1ST2, SULT1ST3 | other | downstream | 1044516 | 1691374 ~ 1698973 (+) |
| G212927 | NA | other | downstream | 2127552 | 2774839 ~ 2775133 (+) |
| CI01000050_02852118_02864754 | RNF122 | other | downstream | 2195532 | 2852118 ~ 2865822 (+) |
| CI01000050_03807697_03808793 | CLCN5B, CLCN5 | other | downstream | 3157856 | 3805143 ~ 3808870 (+) |
