CI01000050_00678001_00716978


Basic Information

Item Value
gene id CI01000050_00678001_00716978
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 677899 ~ 716978 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_00678001_00716978.mRNA
CAATAAATGCATCCATGATGAATATGTTGTATTCCCACAGATATGACATCACTGATGTTTGGAGAAATGCGTCAGTGCTGCAGCGTGTGATTGATTTAAATCATGGAGCCCAAACTCGACTGCTGCGCTTCATCAGTGCCTAACTCCCAGTGTGAGCTGAAGCTCAATATCTACGAGACCATCAGCGAGGGCAATGTGAATAAGCTAGAGAGCTCTGCGCTGGTGCGTGCGGGCAGTGACCCCAGCTCCTACCTGACATCCAAACACCCGCCCGGCGCCCGGCAGAGGTTCATCCGCAGGAGCCTGTGGTTCACGGACAATGACGAGCACCAGCTGGACGACTGCGCTCTGGAGAGTGAGGAGCAGAATAAGATGCTCAGCATCAACCTGCGCACCATAGTGGACCGAACTCTGGCCGTCCGGTCCGGTTTACAGGAAGGATCTAGCACGGAGAGCCAGAAGGGTCAGAAAGACCTTGACAGCACCAGCGCAGACGAGGAGAAGGAGAGAACAGACTCCAAAACGGACTCAACGGATGGCGTTAAGACGAACATTAAGGCGGCCAGTGAGGAGAACGAGGAGGAGGCTGAGATGAAGGCCGTCTCCACCTCTCCGGGCGGACGCTTCCTGAAGTTTGACATCGAGATCGGCCGCGGGTCCTTCAAGACTGTCTACAAGGGCCTGGACACGGACACCTGGGTGGAGGTGGCCTGGTGTGAGCTTCAGCATCTCAAACTGGAATGTGGCGTTGCTGATGGTGATTATATGCCCACACATTCAAGTCATGTCAGGGTTTGCCTGCTCACGTGTTTGGGCGGATTGGAGGTGAATAACCAGAAACACTGCCAAGTAGATGTACATGCATCATATATCTGGAAGCGTCCACTATCGCAGCAAAACTCCACCATCAGCGAGTGTCACAGAGACTCTTCTGAAGTGCAGGGTCGTGCCGTGACCCCTGACCTGATGACCTGTGCATTTACAGGGCTGTTTGTTCTGAATCAGGACCGTAAGCTGTCGAAGGTGGAGCGGCAGCGCTTTAAAGAGGAGGCCGAGATGTTGAAGGGTCTTCAGCACCCAAACATAGTGCGCTTCTATGATTTCTGGGAGTCGCCACTGAAGGGGAAGAAATGCATTGTGTTGGTCACAGAGCTCATGACGTCAGGAACACTGAAAACGTATTTGAAACGCTTTAAGGTGATGAAACCCAAAGTTTTGCGCAGCTGGTGCCGTCAGATTCTCAAAGGTCTGCATTTCCTGCACACGCGCACTCCTCCCATCATCCACCGGGACCTGAAGTGTGATAACATCTTCATCACGGGCCCCACGGGCAGCGTCAAGATCGGGGATCTGGGTCTGGCTACGCTCAAAAGAACCTCCTTTGCTAAGAGTGTGATTGGTACGCCGGAGTTCATGGCCCCAGAGATGTACGAGGAGCATTACGACGAGTCCGTGGATGTCTACGCGTTTGGCATGTGCATGTTGGAGATGGCCACATCTGAATACCCGTATTCAGAGTGTCAGAATGCTGCTCAGATCTACCGCAAAGTCACCAGTGGAGTGAAGCCTGCCAGTTATAATAAGGTGATGGATCCTGAGGTGAAAGAGATCATTGGCGAGTGCATCTGTCAGAATAAAGAGGAGCGGTACTCCATCAAGGACCTGCTGAATCATGCCTTCTTCGCCGAGGACACGGGTGTGAGGGTGGAGCTGGCGGAGGAAGACGACGGGATGAAGACGTCCATCGCGCTGAAGCTGTGGGTGGAGGATCCTCGCAGGCTGAAGGGCAAGTACAGGGACGGAGGCGCCATTGAGTTCACCTTTGACCTGGAGAAGGAGGTTCCTGAAGCCGTGGCGCAGGAGATGGTTGAGTCTGGTTTCTTCCATGAGAGCGACGCAAAGATTGTGGGAAAGTCTATCCGTGACCGTGTGGCTCTGATCAAATGGCGTAGGGAGCGGACGGTGCCGAGGGCCTCGCAGGGTGCTGCTGCCCCGTCCGTGCCAGCCGGGACAGTTCCCATCTTCTGCGAACCACCCTGTCTGGTGGAGCCCGAAGAGCCAGAGGTGGACCAGCAAGTGTGCCCACTTAGTGCCAGGACCACATCCACCACATCTGACAGTGGCATCGGTTCAACCGTGTACTCCGACTCTCACGGCAGCGGTCTGCACAGTGTCATATACCAGTCATTACAGGACTCTGTCTCCACCGCAACCCAAGAGGGTGCGCATCATGCAAGCTCCTCTGTTAATGACTTAAGCCATGAGCATCTCCGACCCACAAGTCCTTCCTTCCTTCAAATACCACCAGACCAATCAGAGTTGACGGAAAGAGGATTTAAAAGTTCTTGCTCTAAGAATTTGTTGTTTGTACCTTCAACTGCTACGACTCGCCGCTATAGCGACACATCAGTGGAGCCATCCTCTGAGACAAAGGGGGAGGAGTCTGTCTCAGCGGTGAGACAGCGTCGCCTTTCTTTAAACCACGCCACTCATCGGCCACCGTCCCCTTGTCAGGCCTGCTGCCTGTCACTATTCCTACTTGGGACTTGTGCAGATGGAAGACATTCACCTTATTCTTCACTTATGCTTCCTGCCACAGGGGCTCGCAGGGGCTCTGTCAATGAGACCTCTGACCTCTCCCAGCTCAACAAATCTCTGCAGAGCATCACAGGCCACAATCTTCAGCCTGCTCCTGCCTTTCTAAGAGCCCCACTGACCAAGCCAGAAAGAGGGTCCTGTCGGCCTACTCGCAGTTACAGCGATGAGGGGCAGGCCACGGAGCCATCTGGCAATGAAGTGGCATCACGTCGCAGAGCAAGTTCTTGTGTTGGCGAACACTCTCGGGCTCATGTGTCTGCCATTTTGAGAGTCCAAAGTCAGGCGGCACCTTCCACAGCTCAACACGTGCAGCCTTACCCTCTTGCGTCCTCCGAGACCCCGGCACAGCCCACTGGACAGGTTCTGTCCACTCCCCAGCCGCTGGCACTTCTGCAAGGCATATTGGTGGCGCCACAAGCCATGAATCCATCGACAGGTCAGACTGCAGAGTCAAACGCACAGACCCATGTGCACCAACCTGCAGGGTTGCACCAGCCTGCCATAGCTCCAAGTTACCATCCTGCTGCAGCAGAGCTAGCCAATGCACAAACATTTCCACCTGTAGTCACAGCTATCCCATCTAAAACAGAAGCAGCGCTGCCTGCGGATCAGAGTTTTCAGAGTGGAGCCTCTGGAGTCTCATCAGCACTTGCACAGCCTCAACAAACACCTGCGTTACACCATTTGCAGCAAACACCTGCGATCGCCACAACAGATGGGCAACTCCACGACTTCTCAAATGTGCAGCAATCTACTCCTGTGCATCTGAGCCAGGCAGGCCCTGCACCATCTTTCCAACAGCTCACCATTCAGACACAACTAATGGACAGCTGGCAGCAAGGAGGACAATCCACCTCCAGTGTCCTGACACAACCTGCACCCCCTCCACAGGCGGCAGCTTACCTCTCACAGTTTCCTTCCCTTAACACGGCTCAGTCAGCTGGGATTCCTCTTCCTGGATGTGACTCATACCCCACCTGCTTTCCCTCTGTGCAGTCGTCCCTCAGTCTGCCGGTCCCAACACACCCCGACATCTCACCAATGTCGTGTTCACAGATAGAGAGTTCTGCGCTAACCCAGTATCCCCACCTGTCCTCCACCTCCCCTATTCCCTCACAATGTTCTGTCCCACCCTTCGCTGCTCCAGTGCCCACAATTCACCAGTACCAGCAGACCTATTCTGTGGCTCAACAGCCCACTGTAAACTCCATGGCCACTCTTTCCCAACATTCCCACAGTCAGGCCACACCCACAGTGCGCCATCCCTCTCCAAATCCCACCTCTATGTGTGTCGGAGCTCCGCCTATCCAGGCATCCTTGGCCAGCCAATGCCAAACCGTTCATGTGGACCAGAACTTGTCCAGCACCCATAATGCACCTCTGCCTCCCACAATCCCGCAGCTCTCGACTTTTAGACCCATCCTCGACACGTTCAGCTCTGCTGTGCCTGTGGACCAAAACCAGGTTTCTCAGCACATGAGCCAAGCGTCTTTACCCACCGTTCCCAGTGCAGGAGCCAGTGCCAGCAGTGCATGTGGATCAGCTCCTCCGGGTCCCGCTGAAGTGTTAACTGAGGATCATGTTGCTGATAAACAGGCAGCACCGGCTGGATCCGCTTATGACAGAAGCTCAATGATTGGATCTCTGCTCTTTCGCAGTATAAACTCAGACGTCACGTCCGGTAAAGAGATGAGCGATGGGAACGAGGGCTCCAACCGAGCTCGCAGTGAATCACGAGTCCGAAAGAACCTTCGCAAATCATCGCGCACGCGCTCCCGACAAGACAAGATGAACAGACCCAAACTCACCATGATCAAAGTGTGTGACACAGGAGACAAGATGGTGGAGTGCCAACTGGAGACTCATAACCATAAGATGGTGACGTTTAAATTCGACCTTGATGGAGATGCTCCAGAGGAGATTGCCACGTATATGGTGGAGAATGAGTTCATTCTGTTGCTGGAGCGGGAGATGTTCATCGAGCAGCTGAAGGAAATCATGGATAAAGCCGAGGACATTCTGAGCGAGGACGCTGAGGGTGAGAAGGCCAACGTCCAGACCTCACCCCTCCGTCAGACGCCCGTCACCGCAGACGCCAGCACACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_00678001_00716978.mRNA True 4704 mRNA 0.54 19 677899 716978

Neighbor

gene id symbol gene type direction distance location
CI01000050_00648100_00653861 NA coding upstream 24026 648100 ~ 653873 (+)
CI01000050_00615170_00641706 NA coding upstream 36125 615170 ~ 641774 (+)
CI01000050_00457216_00463632 NA coding upstream 214253 456930 ~ 463646 (+)
CI01000050_00449181_00451580 NA coding upstream 225852 449181 ~ 452047 (+)
CI01000050_00376389_00376735 NA coding upstream 300935 376217 ~ 376964 (+)
CI01000050_00718711_00742201 NA coding downstream 1733 718711 ~ 742201 (+)
CI01000050_00753574_00762446 S35E2, SLC35E2B coding downstream 35396 752374 ~ 762767 (+)
CI01000050_00770066_00782851 CDK11A, CDK11B coding downstream 53088 770066 ~ 782972 (+)
CI01000050_00818849_00822703 UBIAD1 coding downstream 101871 818849 ~ 823139 (+)
CI01000050_00851621_00899726 MIB2 coding downstream 134548 851526 ~ 901164 (+)
G212261 NA non-coding upstream 13750 663684 ~ 664149 (+)
G212260 NA non-coding upstream 15451 661614 ~ 662448 (+)
G212113 NA non-coding upstream 18686 658564 ~ 659213 (+)
G212257 NA non-coding upstream 30612 647082 ~ 647287 (+)
G212107 NA non-coding upstream 128643 549023 ~ 549256 (+)
G212269 NA non-coding downstream 28969 745947 ~ 746578 (+)
G212104 NA non-coding downstream 47020 763998 ~ 764435 (+)
G212293 NA non-coding downstream 109826 826804 ~ 827128 (+)
G212294 NA non-coding downstream 110840 827818 ~ 828085 (+)
G212296 NA non-coding downstream 192835 909813 ~ 910029 (+)
G212184 NA other upstream 243693 433684 ~ 434206 (+)
G212006 NA other upstream 539888 82604 ~ 138011 (+)
CI01000050_00012155_00026251 NA other upstream 651487 12079 ~ 26412 (+)
CI01000050_01296683_01297763 SELENOK other downstream 579668 1296365 ~ 1298255 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other downstream 974825 1691374 ~ 1698973 (+)
G212927 NA other downstream 2057861 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 2125841 2852118 ~ 2865822 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 3088165 3805143 ~ 3808870 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016857 wnk4,LOC108257086,LOC108429078,LOC105912834 coding CM030122.1 CM030122.1 32545619 ~ 32546814 (-)