RNA id: CI01000050_00678001_00716978.mRNA


Basic Information

Item Value
RNA id CI01000050_00678001_00716978.mRNA
length 4704
RNA type mRNA
GC content 0.54
exon number 19
gene id CI01000050_00678001_00716978
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 677899 ~ 716978 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAATAAATGCATCCATGATGAATATGTTGTATTCCCACAGATATGACATCACTGATGTTTGGAGAAATGCGTCAGTGCTGCAGCGTGTGATTGATTTAAATCATGGAGCCCAAACTCGACTGCTGCGCTTCATCAGTGCCTAACTCCCAGTGTGAGCTGAAGCTCAATATCTACGAGACCATCAGCGAGGGCAATGTGAATAAGCTAGAGAGCTCTGCGCTGGTGCGTGCGGGCAGTGACCCCAGCTCCTACCTGACATCCAAACACCCGCCCGGCGCCCGGCAGAGGTTCATCCGCAGGAGCCTGTGGTTCACGGACAATGACGAGCACCAGCTGGACGACTGCGCTCTGGAGAGTGAGGAGCAGAATAAGATGCTCAGCATCAACCTGCGCACCATAGTGGACCGAACTCTGGCCGTCCGGTCCGGTTTACAGGAAGGATCTAGCACGGAGAGCCAGAAGGGTCAGAAAGACCTTGACAGCACCAGCGCAGACGAGGAGAAGGAGAGAACAGACTCCAAAACGGACTCAACGGATGGCGTTAAGACGAACATTAAGGCGGCCAGTGAGGAGAACGAGGAGGAGGCTGAGATGAAGGCCGTCTCCACCTCTCCGGGCGGACGCTTCCTGAAGTTTGACATCGAGATCGGCCGCGGGTCCTTCAAGACTGTCTACAAGGGCCTGGACACGGACACCTGGGTGGAGGTGGCCTGGTGTGAGCTTCAGCATCTCAAACTGGAATGTGGCGTTGCTGATGGTGATTATATGCCCACACATTCAAGTCATGTCAGGGTTTGCCTGCTCACGTGTTTGGGCGGATTGGAGGTGAATAACCAGAAACACTGCCAAGTAGATGTACATGCATCATATATCTGGAAGCGTCCACTATCGCAGCAAAACTCCACCATCAGCGAGTGTCACAGAGACTCTTCTGAAGTGCAGGGTCGTGCCGTGACCCCTGACCTGATGACCTGTGCATTTACAGGGCTGTTTGTTCTGAATCAGGACCGTAAGCTGTCGAAGGTGGAGCGGCAGCGCTTTAAAGAGGAGGCCGAGATGTTGAAGGGTCTTCAGCACCCAAACATAGTGCGCTTCTATGATTTCTGGGAGTCGCCACTGAAGGGGAAGAAATGCATTGTGTTGGTCACAGAGCTCATGACGTCAGGAACACTGAAAACGTATTTGAAACGCTTTAAGGTGATGAAACCCAAAGTTTTGCGCAGCTGGTGCCGTCAGATTCTCAAAGGTCTGCATTTCCTGCACACGCGCACTCCTCCCATCATCCACCGGGACCTGAAGTGTGATAACATCTTCATCACGGGCCCCACGGGCAGCGTCAAGATCGGGGATCTGGGTCTGGCTACGCTCAAAAGAACCTCCTTTGCTAAGAGTGTGATTGGTACGCCGGAGTTCATGGCCCCAGAGATGTACGAGGAGCATTACGACGAGTCCGTGGATGTCTACGCGTTTGGCATGTGCATGTTGGAGATGGCCACATCTGAATACCCGTATTCAGAGTGTCAGAATGCTGCTCAGATCTACCGCAAAGTCACCAGTGGAGTGAAGCCTGCCAGTTATAATAAGGTGATGGATCCTGAGGTGAAAGAGATCATTGGCGAGTGCATCTGTCAGAATAAAGAGGAGCGGTACTCCATCAAGGACCTGCTGAATCATGCCTTCTTCGCCGAGGACACGGGTGTGAGGGTGGAGCTGGCGGAGGAAGACGACGGGATGAAGACGTCCATCGCGCTGAAGCTGTGGGTGGAGGATCCTCGCAGGCTGAAGGGCAAGTACAGGGACGGAGGCGCCATTGAGTTCACCTTTGACCTGGAGAAGGAGGTTCCTGAAGCCGTGGCGCAGGAGATGGTTGAGTCTGGTTTCTTCCATGAGAGCGACGCAAAGATTGTGGGAAAGTCTATCCGTGACCGTGTGGCTCTGATCAAATGGCGTAGGGAGCGGACGGTGCCGAGGGCCTCGCAGGGTGCTGCTGCCCCGTCCGTGCCAGCCGGGACAGTTCCCATCTTCTGCGAACCACCCTGTCTGGTGGAGCCCGAAGAGCCAGAGGTGGACCAGCAAGTGTGCCCACTTAGTGCCAGGACCACATCCACCACATCTGACAGTGGCATCGGTTCAACCGTGTACTCCGACTCTCACGGCAGCGGTCTGCACAGTGTCATATACCAGTCATTACAGGACTCTGTCTCCACCGCAACCCAAGAGGGTGCGCATCATGCAAGCTCCTCTGTTAATGACTTAAGCCATGAGCATCTCCGACCCACAAGTCCTTCCTTCCTTCAAATACCACCAGACCAATCAGAGTTGACGGAAAGAGGATTTAAAAGTTCTTGCTCTAAGAATTTGTTGTTTGTACCTTCAACTGCTACGACTCGCCGCTATAGCGACACATCAGTGGAGCCATCCTCTGAGACAAAGGGGGAGGAGTCTGTCTCAGCGGTGAGACAGCGTCGCCTTTCTTTAAACCACGCCACTCATCGGCCACCGTCCCCTTGTCAGGCCTGCTGCCTGTCACTATTCCTACTTGGGACTTGTGCAGATGGAAGACATTCACCTTATTCTTCACTTATGCTTCCTGCCACAGGGGCTCGCAGGGGCTCTGTCAATGAGACCTCTGACCTCTCCCAGCTCAACAAATCTCTGCAGAGCATCACAGGCCACAATCTTCAGCCTGCTCCTGCCTTTCTAAGAGCCCCACTGACCAAGCCAGAAAGAGGGTCCTGTCGGCCTACTCGCAGTTACAGCGATGAGGGGCAGGCCACGGAGCCATCTGGCAATGAAGTGGCATCACGTCGCAGAGCAAGTTCTTGTGTTGGCGAACACTCTCGGGCTCATGTGTCTGCCATTTTGAGAGTCCAAAGTCAGGCGGCACCTTCCACAGCTCAACACGTGCAGCCTTACCCTCTTGCGTCCTCCGAGACCCCGGCACAGCCCACTGGACAGGTTCTGTCCACTCCCCAGCCGCTGGCACTTCTGCAAGGCATATTGGTGGCGCCACAAGCCATGAATCCATCGACAGGTCAGACTGCAGAGTCAAACGCACAGACCCATGTGCACCAACCTGCAGGGTTGCACCAGCCTGCCATAGCTCCAAGTTACCATCCTGCTGCAGCAGAGCTAGCCAATGCACAAACATTTCCACCTGTAGTCACAGCTATCCCATCTAAAACAGAAGCAGCGCTGCCTGCGGATCAGAGTTTTCAGAGTGGAGCCTCTGGAGTCTCATCAGCACTTGCACAGCCTCAACAAACACCTGCGTTACACCATTTGCAGCAAACACCTGCGATCGCCACAACAGATGGGCAACTCCACGACTTCTCAAATGTGCAGCAATCTACTCCTGTGCATCTGAGCCAGGCAGGCCCTGCACCATCTTTCCAACAGCTCACCATTCAGACACAACTAATGGACAGCTGGCAGCAAGGAGGACAATCCACCTCCAGTGTCCTGACACAACCTGCACCCCCTCCACAGGCGGCAGCTTACCTCTCACAGTTTCCTTCCCTTAACACGGCTCAGTCAGCTGGGATTCCTCTTCCTGGATGTGACTCATACCCCACCTGCTTTCCCTCTGTGCAGTCGTCCCTCAGTCTGCCGGTCCCAACACACCCCGACATCTCACCAATGTCGTGTTCACAGATAGAGAGTTCTGCGCTAACCCAGTATCCCCACCTGTCCTCCACCTCCCCTATTCCCTCACAATGTTCTGTCCCACCCTTCGCTGCTCCAGTGCCCACAATTCACCAGTACCAGCAGACCTATTCTGTGGCTCAACAGCCCACTGTAAACTCCATGGCCACTCTTTCCCAACATTCCCACAGTCAGGCCACACCCACAGTGCGCCATCCCTCTCCAAATCCCACCTCTATGTGTGTCGGAGCTCCGCCTATCCAGGCATCCTTGGCCAGCCAATGCCAAACCGTTCATGTGGACCAGAACTTGTCCAGCACCCATAATGCACCTCTGCCTCCCACAATCCCGCAGCTCTCGACTTTTAGACCCATCCTCGACACGTTCAGCTCTGCTGTGCCTGTGGACCAAAACCAGGTTTCTCAGCACATGAGCCAAGCGTCTTTACCCACCGTTCCCAGTGCAGGAGCCAGTGCCAGCAGTGCATGTGGATCAGCTCCTCCGGGTCCCGCTGAAGTGTTAACTGAGGATCATGTTGCTGATAAACAGGCAGCACCGGCTGGATCCGCTTATGACAGAAGCTCAATGATTGGATCTCTGCTCTTTCGCAGTATAAACTCAGACGTCACGTCCGGTAAAGAGATGAGCGATGGGAACGAGGGCTCCAACCGAGCTCGCAGTGAATCACGAGTCCGAAAGAACCTTCGCAAATCATCGCGCACGCGCTCCCGACAAGACAAGATGAACAGACCCAAACTCACCATGATCAAAGTGTGTGACACAGGAGACAAGATGGTGGAGTGCCAACTGGAGACTCATAACCATAAGATGGTGACGTTTAAATTCGACCTTGATGGAGATGCTCCAGAGGAGATTGCCACGTATATGGTGGAGAATGAGTTCATTCTGTTGCTGGAGCGGGAGATGTTCATCGAGCAGCTGAAGGAAATCATGGATAAAGCCGAGGACATTCTGAGCGAGGACGCTGAGGGTGAGAAGGCCAACGTCCAGACCTCACCCCTCCGTCAGACGCCCGTCACCGCAGACGCCAGCACACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240786 lncRNA upstream 13750 663684 ~ 664149 (+) True G212261
TU240785 lncRNA upstream 15451 661614 ~ 662448 (+) True G212260
TU240623 lncRNA upstream 18686 658564 ~ 659213 (+) True G212113
TU240782 lncRNA upstream 30612 647082 ~ 647287 (+) True G212257
TU240617 lncRNA upstream 128643 549023 ~ 549256 (+) True G212107
TU240794 lncRNA downstream 28969 745947 ~ 746578 (+) True G212269
TU240614 lncRNA downstream 47020 763998 ~ 764435 (+) True G212104
TU240818 lncRNA downstream 109826 826804 ~ 827128 (+) True G212293
TU240819 lncRNA downstream 110840 827818 ~ 828085 (+) True G212294
TU240821 lncRNA downstream 192835 909813 ~ 910029 (+) True G212296
CI01000050_00648100_00653861.mRNA mRNA upstream 24026 648100 ~ 653873 (+) True CI01000050_00648100_00653861
CI01000050_00615170_00641706.mRNA mRNA upstream 36125 615170 ~ 641774 (+) True CI01000050_00615170_00641706
CI01000050_00457216_00463632.mRNA mRNA upstream 214253 456930 ~ 463646 (+) True CI01000050_00457216_00463632
CI01000050_00449181_00451580.mRNA mRNA upstream 225852 449181 ~ 452047 (+) True CI01000050_00449181_00451580
CI01000050_00376389_00376735.mRNA mRNA upstream 300935 376217 ~ 376964 (+) True CI01000050_00376389_00376735
CI01000050_00718711_00742201.mRNA mRNA downstream 1733 718711 ~ 742201 (+) True CI01000050_00718711_00742201
CI01000050_00753574_00762446.mRNA mRNA downstream 35396 752374 ~ 762767 (+) True CI01000050_00753574_00762446
CI01000050_00770066_00782851.mRNA mRNA downstream 53088 770066 ~ 782972 (+) True CI01000050_00770066_00782851
CI01000050_00818849_00822703.mRNA mRNA downstream 101871 818849 ~ 823139 (+) True CI01000050_00818849_00822703
CI01000050_00851621_00899726.mRNA mRNA downstream 134548 851526 ~ 901164 (+) True CI01000050_00851621_00899726
TU240705 other upstream 243693 433684 ~ 434206 (+) True G212184
TU240505 other upstream 539888 82604 ~ 138011 (+) True G212006
TU240463 other upstream 651487 22484 ~ 26412 (+) True CI01000050_00012155_00026251
TU240937 other downstream 579668 1299364 ~ 1299606 (+) True G212403
TU240958 other downstream 974825 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU241491 other downstream 2057861 2774839 ~ 2775133 (+) True G212927
TU241503 other downstream 2125841 2842819 ~ 2843139 (+) True G212938
TU243391 other downstream 3088165 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00016857 True 582 mRNA 0.58 3 CM030122.1 32545619 ~ 32546814 (-)