CI01000050_00818849_00822703 (UBIAD1)


Basic Information

Item Value
gene id CI01000050_00818849_00822703
gene name UBIAD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 818849 ~ 823139 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_00818849_00822703.mRNA
ATGAAGCAGAGCCGCGGAGAGACCTGCGTGCTCGCGGGATCTAACGGACTGAATGGAACGAGGTCATCGGGAGTCGAGCGTGACCGCAGCGGCCAGCCTTCCCGCGTGGCCGGGATGGCGTTGGACATGCGGGGCAAGTGCGCGGCGTACGTGTTGGCCCTGAGGCCGTGGAGTTTCAGCGCCTCACTCACGCCTGTGGCTCTGGGCAGCGCTCTGGCCTACAAACTGGAGGGGTCGGTGGACCTCCTGGTTCTCCTGGTCTGTGCCGTGGCGGTTCTGGTGGTTCATGGTGCAGGGAACCTGGTGAACACCTACTATGATTTCTCCAAGGGAATCGATCACAAGAAGAGCGACGACAGGACTCTGGTGGATCAGATCCTGAAGCCGCAGGACGTGGTGATGTTTGGGGCGGTGTTGTACTCGGCAGGATGTCTCTGTGCCACGCTGCTCTACTTCCTGTCCACCCTGAAACTAGAGCACTTAGCTCTCATTTACTTCGGAGGACTGTCCAGCTCTTTTTTATACACTGGAGGCATCGGACTGAAGTACGTTGCTCTGGGCGACGTGGTCATCCTCATCACCTTCGGTCCTCTGGCGGTGATGTTCGCTCACGCTGTGCAGGTGGGCTACCTGTCGGTGCTGCCGCTGGTGTACGCCGTGCCGCTGGCGCTCAACACCGAAGCCATCCTGCACAGCAACAACACCCGAGACATGGACTCGGACAAGCAGGCGGGCATCGTCACCCTGGCCATCCTGGTGGGGCCCACGCTGTCCTACGTCATCTACAACTTGCTGCTCTTCGTCCCCTATCTGCTGTTCTGCATCTTAGCCACGCGCTACACCATTAGCATGGCTCTGCCGCTGCTGACGCTGCCCATGGCCTTTCCTCTCGAGAGGCAGTTCCGTCGGCAGTGTTACGCCAAGATCCCACAAAAGACTGCCAAGCTCAATTTGCTCATGGGACTCTTCTACGTTTTCGGGATTATTTTGGCACCGCAGGGTAGCTTGCCGTTATTGTGAAAGAACTAGAACTTTTGTCCTATTCGTTTTAAACAACTCTAGATACTTTTGTATTTATAGTAATGTTAATCTAAAATTCAAAGACTTTAATTTATTGTGGTTTATTTATGTTTTCGGAGTGGGCGAGTGCTCTCGTGCAGCGCTAAAGGTTCATAGACTGTCCGGTACGTCAGTATTGTAAAAAGAGACCAGTCTGTAAATGAAGAAGCACATACATACACACACATTATATATATATATATATATATATATATATATATATTTATAAAACCACGATATCATCTTCCTTGTCAATTCTCAAGTAGCAGCTCTTCAGTTCTGTGTCCATGTCTGCTCAGATTTGCCTAAAAACATGGTGGTCAGTTGGTGAGTGTTTTAATGAGGGAATCTTTAGTTTTTTAGGTTTAGTGCCATTGACTTGCAGGGTTTTTGCCAA

Function

symbol description
ubiad1 Enables antioxidant activity; nitric-oxide synthase activity; and prenyltransferase activity. Involved in endothelial cell development; menaquinone biosynthetic process; and vitamin K biosynthetic process. Acts upstream of or within cellular response to fluid shear stress; circulatory system development; and ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate. Located in Golgi apparatus. Is integral component of Golgi membrane. Is expressed in head; heart; and heart tube. Human ortholog(s) of this gene implicated in Schnyder corneal dystrophy. Orthologous to human UBIAD1 (UbiA prenyltransferase domain containing 1).

GO:

id name namespace
GO:0008412 4-hydroxybenzoate octaprenyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_00818849_00822703.mRNA True 1456 mRNA 0.51 2 818849 823139

Neighbor

gene id symbol gene type direction distance location
CI01000050_00770066_00782851 CDK11A, CDK11B coding upstream 35877 770066 ~ 782972 (+)
CI01000050_00753574_00762446 S35E2, SLC35E2B coding upstream 56082 752374 ~ 762767 (+)
CI01000050_00718711_00742201 NA coding upstream 76648 718711 ~ 742201 (+)
CI01000050_00678001_00716978 NA coding upstream 101871 677899 ~ 716978 (+)
CI01000050_00648100_00653861 NA coding upstream 164976 648100 ~ 653873 (+)
CI01000050_00851621_00899726 MIB2 coding downstream 28387 851526 ~ 901164 (+)
CI01000050_00916485_00921744 DCAF1 coding downstream 93346 916485 ~ 921744 (+)
CI01000050_00931338_00939002 DCAF1 coding downstream 108199 931338 ~ 939002 (+)
CI01000050_00967544_00997883 BSN, BSNA coding downstream 144405 967544 ~ 997883 (+)
CI01000050_01002924_01005496 NA coding downstream 179785 1002924 ~ 1005514 (+)
G212104 NA non-coding upstream 54414 763998 ~ 764435 (+)
G212269 NA non-coding upstream 72271 745947 ~ 746578 (+)
G212261 NA non-coding upstream 154700 663684 ~ 664149 (+)
G212260 NA non-coding upstream 156401 661614 ~ 662448 (+)
G212113 NA non-coding upstream 159636 658564 ~ 659213 (+)
G212293 NA non-coding downstream 3665 826804 ~ 827128 (+)
G212294 NA non-coding downstream 4679 827818 ~ 828085 (+)
G212296 NA non-coding downstream 86674 909813 ~ 910029 (+)
G212366 NA non-coding downstream 348995 1172134 ~ 1176043 (+)
G212376 NA non-coding downstream 372886 1196025 ~ 1201801 (+)
G212184 NA other upstream 384643 433684 ~ 434206 (+)
G212006 NA other upstream 680838 82604 ~ 138011 (+)
CI01000050_00012155_00026251 NA other upstream 792437 12079 ~ 26412 (+)
CI01000050_01296683_01297763 SELENOK other downstream 473507 1296365 ~ 1298255 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other downstream 868664 1691374 ~ 1698973 (+)
G212927 NA other downstream 1951700 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 2019680 2852118 ~ 2865822 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 2982004 3805143 ~ 3808870 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036826 ubiad1 coding NC_007119.7 CM002892.2 53918234 ~ 53926228 (-)
bowfin (Amia calva) AMCG00002248 ubiad1 coding CM030136.1 CM030136.1 9018607 ~ 9022271 (-)