G212269


Basic Information

Item Value
gene id G212269
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 745947 ~ 746578 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU240794
CACAAAAGTAACGGATTTCAATATTACACGAGTGCTGTTTGTCCCAAATAAAATGAGTGCAACATGCAATACTTATTTTATACGTGTTTAAAATAACTTTATATTGTGTTCTTTTAGACAAAATATTGTCTGGTTTGTTCAATTTTGCCAATGAAACTATAAAGACAAAGCAGAACTGTTCGTCTCCACGCAACACACAGCAGTGTTTCATTTCTGAATCTGCGTTTTGAACGTAACAAAAGTGACTCAGCGGATCATTCATAAAAGACTTGAAGCGGCGCTACACGCAGACCGACAGAGGCTTACAGTGATATAGGTTACGCTTACCAATTTCTTGTTATCCACATGGACATCAATGTCCTCATTTTAAGACACAGTTTTTCATTTTCATTTTCTTTTTTGCGTTTTCTGTTTTCTGTTTTGCGCCCCAGAAACGCTTCCCTCCTCTGTCCATTTTGGACATGTGACTGTCCGTAACAGAGCAACGGCTTTTGTCGAAATGGTGAGCAGTTGATATCACTTGAATTTAAAATGCTAAACAAACATTATTTTTCAACAAACATCATTTTTAAATTTATTTTAAACGTTTTATTCAAAAAGATTTTCAAAGACGTTTTGGCACAATGGCGCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU240794 True 632 lncRNA 0.36 1 745947 746578

Neighbor

gene id symbol gene type direction distance location
CI01000050_00718711_00742201 NA coding upstream 3746 718711 ~ 742201 (+)
CI01000050_00678001_00716978 NA coding upstream 28969 677899 ~ 716978 (+)
CI01000050_00648100_00653861 NA coding upstream 92074 648100 ~ 653873 (+)
CI01000050_00615170_00641706 NA coding upstream 104173 615170 ~ 641774 (+)
CI01000050_00457216_00463632 NA coding upstream 282301 456930 ~ 463646 (+)
CI01000050_00753574_00762446 S35E2, SLC35E2B coding downstream 5796 752374 ~ 762767 (+)
CI01000050_00770066_00782851 CDK11A, CDK11B coding downstream 23488 770066 ~ 782972 (+)
CI01000050_00818849_00822703 UBIAD1 coding downstream 72271 818849 ~ 823139 (+)
CI01000050_00851621_00899726 MIB2 coding downstream 104948 851526 ~ 901164 (+)
CI01000050_00916485_00921744 DCAF1 coding downstream 169907 916485 ~ 921744 (+)
G212261 NA non-coding upstream 81798 663684 ~ 664149 (+)
G212260 NA non-coding upstream 83499 661614 ~ 662448 (+)
G212113 NA non-coding upstream 86734 658564 ~ 659213 (+)
G212257 NA non-coding upstream 98660 647082 ~ 647287 (+)
G212107 NA non-coding upstream 196691 549023 ~ 549256 (+)
G212104 NA non-coding downstream 17420 763998 ~ 764435 (+)
G212293 NA non-coding downstream 80226 826804 ~ 827128 (+)
G212294 NA non-coding downstream 81240 827818 ~ 828085 (+)
G212296 NA non-coding downstream 163235 909813 ~ 910029 (+)
G212366 NA non-coding downstream 425556 1172134 ~ 1176043 (+)
G212184 NA other upstream 311741 433684 ~ 434206 (+)
G212006 NA other upstream 607936 82604 ~ 138011 (+)
CI01000050_00012155_00026251 NA other upstream 719535 12079 ~ 26412 (+)
CI01000050_01296683_01297763 SELENOK other downstream 550068 1296365 ~ 1298255 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other downstream 945225 1691374 ~ 1698973 (+)
G212927 NA other downstream 2028261 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 2096241 2852118 ~ 2865822 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 3058565 3805143 ~ 3808870 (+)

Expression


Co-expression Network