CI01000050_03807697_03808793 (CLCN5B, CLCN5)


Basic Information

Item Value
gene id CI01000050_03807697_03808793
gene name CLCN5B, CLCN5
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3805143 ~ 3808870 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_03807697_03808793.mRNA
GGGGCCAGTGCATATGTGGTGAGTTATTTCATGTATGTGTGCTGGGCTCTTCTCTTTGCCTTCCTGGCAGTGACTCTGGTGAGAGCATTCGCCCCTTACGCTTGTGGTTCTGGAATACCAGAGTTTTATATTTCAAACTGTCTGAGTAAGATTAAGACCATTCTGAGTGGCTTTATTATCCGTGGGTACCTGGGAAAGTGGACTTTGATCATAAAGACCATCACATTGGTGCTGGCCGTCTCTTCTGGCCTCAGTCTGGGGAAGGAGGGTCCGCTGGTTCACGTAGCCTGCTGCTGCGCAAACATCCTATGCCATTTCTTCACCAAATACCGCCGAAATGAGGCCAAGAGGCGAGAGGTGAGAGAAACTGGGGAGGGAGATAAGGAGAGGAGAAATGGAGTGATGAAGAGATAAGGGAAAATAGAGTGTGGGACAGACTGACAGAAAAGTAACAGAAAAGAATTTTGTCTTGGATCAAAACATGTAATGTA
>TU243391
TCACTTGATAGTTTGGTTCTCAGTTTAGGCTCCCTTAGAGCTTAGACACTGTCACTGGCTGACGCCTGTGTCTTTCTGGAATAGTAGGCCCTGTTCGGGCCTCTTTCAGAGCAGAGTGGCGTAGTTTGTACTCTTGCTTTGAGAGTAAAAAGTGTTTTACTAAGTACATTGCCTGTTGGAATGTGTTGAATTAGAATTAAGCTCAGGTTGAGTTATATATTTAACCTCACTGGAGAGTTTGGTTATCATATTGGCTCCCTTAGAGCTTAGACACTGCCACGAGCTGACGCCACGTGTCTTTCTGGAGTCGTAGGCCTTCTTTTGGGCCTCCTTCAGAGCATGATGGTGTAAGTTTGTACTCTTGCTTAAAGAGTAAAAAGTGTTTTTACTGAGTACACTGCTTGTCGGAATGTGTTGAGGTAGACTGTGATGTGGGCATTCTACAGTCTTATCTGCTAGTTTAACTCTGTTTCAATCTGAACGAGTTCCCATGTTTGTGGGATCTTGCTTTATCAGCAAGAGAGCTGCTTTAGGTGTGTGGCCTTCACAGGCCGCCCTTTAAGCTATCCCCCCCACATCTGGATGTCCTTAAGCAGATTAAGCATGTAGTTTCACATGTTTGGCCTTTTGCAAGGCTGCTGTGATATTTCTACACGATGTAGAATAACGTCATGTTGCAGGCCCCTTCCTGGGCCTCCATGATTTTATGCCTTCAGTACAGTCTATCTGTTAGACTGTAACAACCCTTGTTTGAGGGTTGTTCTGCATAGTTCTTAGCTCCCTTAGCTCCCTAAGTCTGGTCAGTGGTTGAAGGCCTCTCTGAGGCCTCCCTGTTCAAGATCAGCCCCTAGGCTGGTTGTACTTCCCTTGTTTGGGTCTCTTAGAGTGCACAGCCTCCTCAGTGCAAATAATCAGGCGCTGAGTAGATCCTATGATTGAGCAGAGTGTTACTCCCCTCATTGGTAAGGGTAAAAAGCGCTAAGCTGAGTCCTGCACTCCAGGATGCCTGTCTCTACGTTCTGGTCTGGAGTTGGTTACTGCCTCTGCAGTCACTCTTACTAGATATCTTCTCTGTGATCAGACAGGTCATTGGCCAAGACTAGGTTGTTTTTAGACCAGGTCGGCCTCCCTGGTGGCATTCAGGGTTGACGTTGTTCCCCTGACAAGTGACTGGCTAGGGTTCCTTCGGGCCCCCTGGCCACATTCCCTTAGAGGTACCCTCTTTTCTCTGAAAAGAAGTTTGGTCCCAGAAGCCTTTGAGCGGCCTTGGTAGGCCTTCTGTGAAAGGCCTCTTTGAGGCTTATAGCTTGGGCTGTTGGCCATAGGGAATGCTGTCACTGACAGCCTATGTATGACCCGTAGGGGGAGTGGTTCTGGCATTTGACGTTTGTCTAGCCATCTTTGGCATGCACTCCCCTCAAACATGGCGGCGTGGGTATATCGTTCCCCATATGCGTTTCAAACGCAGTGTAGAGTTCCCTTTCGAAAGGGAACGTCTCAGGTTACGTATGTAACCATGGTTCCCTGAGAACAGGGAATGAGACACTGCATTACCTGCCATGCATCGGGGCTGCCTGCTTTCAGACACCGGTTCACGTGATGACGTTCCCCTTATGCGTTTCAAACGCAGTCTCGTTCCCTGTTCTCAGGGAACCATGGTTACATACATAACCTGAGACGTTTTCTGTTTAATATATTTTAAAATGTAATGTATTCCTGTGATGGCAAAGCTGAATTTTCAACATTACTCCAGTGTTCAGTGTCACATGATCCATCAGAAATCATTCTAATATGCTGATTTGCTGCTCAAGAAACATTTTTTCCCCCTTCTTATTATCAATGAAAACAATTGTGCTGCTTAATTTTTGTGGAAACCGTGATACATTTTTTTTTTTTCAGGATTTTTCGATGAACACAGTTCAAAAGAACAGCATTTAATTGAAATAGATTTTTTAAAATTATTTTATAAATCTCTTTACTGTCACTTTAATGCATTCTTGCTGAATGAAAGTATTAACATCTTTAAAAAAGTCTTACTGACCTCAGACTTCTGAACGGTAGTTCATATCACCCCCTTGTGGTATGCAAACAAAGCTACAATGTAGAAAGTTGAAGAAATTACAGTAAAATATTTTCATCTCAGATAATTTTTTTATTATTACTTTGTAAAACTACTGGTATTATATATTCATTGGATTTAAACATTTATTAACAAATTCTGAAATGCAGCAGTAAAGGAATTTTGTAAAGAAATTTCTATTTTTCAGGATCCAATCTATTGAGATCGGAGGCATTATTTTAAAGACTTTTAAGCCAGTGTTTCATGTAAATCTAGAATAAAGATATACATATTAATATTGAGGGTGTTTCAAGCCTTAATTAGGAGGTCATATTCTCCTAAATCCCCCATTGTTCATTTCTTGATCGTCAACTTCAGGATGTAAGTAAACAGTATGCAAGAAAAATTGTGGCCTCTAACTGTGGATATATCCTGTAGGGGGTGACTGTGTATAAGCCCCTTTGATTTCAGCTGTATCCTGTGTGTGTCCTGCAGGGGGCCAGTGCATATGTGGTGAGTTATTTCATGTATGTGTGCTGGGCTCTTCTCTTTGCCTTCCTGGCAGTGACTCTGGTGAGAGCATTCGCCCCTTACGCTTGTGGTTCTGGAATACCAGAGATTAAGACCATTCTGAGTGGCTTTATTATCCGTGGGTACCTGGGAAAGTGGACTTTGATCATAAAGACCATCACATTGGTGCTGGCCGTCTCTTCTGGCCTCAGTCTGGGGAAGGAGGGTCCGCTGGTTCACGTAGCCTGCTGCTGCGCAAACATCCTATGCCATTTCTTCACCAAATACCGCCGAAATGAGGCCAAGAGGCGAGAGGTG
>TU243394
CCTCTAACTGTGGATATATCCTGTAGGGGGTGACTGTGTATAAGCCCCTTTGATTTCAGCTGTATCCTGTGTGTGTCCTGCAGGGGGCCAGTGCATATGTGGTGAGTTATTTCATGTATGTGTGCTGGGCTCTTCTCTTTGCCTTCCTGGCAGTGACTCTGGTGAGAGCATTCGCCCCTTACGCTTGTGGTTCTGGAATACCAGAGATTAAGACCATTCTGAGTGGCTTTATTATCCGTGGGTACCTGGGAAAGTGGACTTTGATCATAAAGACCATCACATTGGTGCTGGCCGTCTCTTCTGGCCTCAGTCTGGGGAAGGAGGGTCCGCTGGTTCACGTAGCCTGCTGCTGCGCAAACATCCTATGCCATTTCTTCACCAAATACCGCCGAAATGAGGCCAAGAGGCGAGAGGTG
>TU243390
AGGGGGCCAGTGCATATGTGGTGAGTTATTTCATGTATGTGTGCTGGGCTCTTCTCTTTGCCTTCCTGGCAGTGACTCTGGTGAGAGCATTCGCCCCTTACGCTTGTGGTTCTGGAATACCAGAGATTAAGACCATTCTGAGTGGCTTTATTATCCGTGGGTACCTGGGAAAGTGGACTTTGATCATAAAGACCATCACATTGGTGCTGGCCGTCTCTTCTGGCCTCAGTCTGGGGAAGGAGGGTCCGCTGGTTCACGTAGCCTGCTGCTGCGCAAACATCCTATGCCATTTCTTCACCAAATACCGCCGAAATGAGGCCAAGAGGCGAGAGGTG

Function

symbol description
clcn5b Predicted to enable solute:proton antiporter activity and voltage-gated chloride channel activity. Predicted to act upstream of or within chloride transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus; early endosome; and synaptic vesicle. Predicted to be integral component of plasma membrane. Is expressed in several structures, including eye; gill; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Dent disease; X-linked nephrolithiasis type I; X-linked recessive hypophosphatemic rickets; and low molecular weight proteinuria with hypercalciuric nephrocalcinosis. Orthologous to human CLCN5 (chloride voltage-gated channel 5).
clcn5 Enables identical protein binding activity. Predicted to be involved in excretion and ion transmembrane transport. Predicted to act upstream of or within endocytosis. Located in several cellular components, including Golgi apparatus; apical part of cell; and cytosol. Implicated in Dent disease; X-linked nephrolithiasis type I; X-linked recessive hypophosphatemic rickets; and low molecular weight proteinuria with hypercalciuric nephrocalcinosis.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K05012 CLCN3_4_5; chloride channel 3/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_03807697_03808793.mRNA False 491 mRNA 0.47 3 3807697 3808870
TU243391 False 2887 TUCP 0.44 2 3805143 3808739
TU243394 False 416 TUCP 0.51 2 3807614 3808739
TU243390 True 335 TUCP 0.52 2 3807695 3808739

Neighbor

gene id symbol gene type direction distance location
CI01000050_03679119_03683710 NA coding upstream 123528 3679080 ~ 3684169 (+)
CI01000050_03641769_03645039 NA coding upstream 162588 3639187 ~ 3645109 (+)
CI01000050_03599274_03618237 SLC25A37 coding upstream 188657 3599274 ~ 3619040 (+)
CI01000050_03573096_03586434 ENTPD4 coding upstream 220386 3573096 ~ 3587311 (+)
CI01000050_03557372_03567755 CHMP7 coding upstream 239718 3557327 ~ 3567979 (+)
CI01000050_03814516_03818892 NA coding downstream 4550 3813420 ~ 3818939 (+)
CI01000050_03938328_03956122 RHOBTB2 coding downstream 129458 3931890 ~ 3957044 (+)
CI01000050_03989489_04121180 NA coding downstream 179387 3988257 ~ 4121393 (+)
CI01000050_04122649_04127014 EGR3 coding downstream 313779 4122649 ~ 4127045 (+)
CI01000050_04159232_04161131 NA coding downstream 350141 4159011 ~ 4161131 (+)
G214506 NA non-coding upstream 45174 3758375 ~ 3762523 (+)
G214503 NA non-coding upstream 54429 3753042 ~ 3753268 (+)
G214501 NA non-coding upstream 69155 3738191 ~ 3738542 (+)
G214500 NA non-coding upstream 75524 3731968 ~ 3732173 (+)
G214496 NA non-coding upstream 78887 3728533 ~ 3728810 (+)
G214567 NA non-coding downstream 34510 3843380 ~ 3843726 (+)
G214601 NA non-coding downstream 60410 3869280 ~ 3869506 (+)
G214605 NA non-coding downstream 64285 3873155 ~ 3903728 (+)
G214632 NA non-coding downstream 95905 3904775 ~ 3905081 (+)
CI01000050_02852118_02864754 RNF122 other upstream 941875 2852118 ~ 2865822 (+)
G212927 NA other upstream 1032564 2774839 ~ 2775133 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other upstream 2110289 1691374 ~ 1698973 (+)
CI01000050_01296683_01297763 SELENOK other upstream 2508091 1296365 ~ 1298255 (+)
G212184 NA other upstream 3373491 433684 ~ 434206 (+)
G214717 NA other downstream 298712 4107582 ~ 4108280 (+)
CI01000050_04591548_04592778 NA other downstream 782685 4589926 ~ 4593049 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 1598715 5407585 ~ 5409417 (+)
G215539 NA other downstream 1820740 5629610 ~ 5631203 (+)

Expression


Co-expression Network