CI01000050_03814516_03818892


Basic Information

Item Value
gene id CI01000050_03814516_03818892
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3813420 ~ 3818939 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_03814516_03818892.mRNA
GTTTAAAAATAAATGAAATCATTATTAGATTCTTAACTTTCACTGCTATTAGGTGGCATTCAGAGTCGTTTCCATGATCAGGATCTTCTTATTGATTTATTTACCAAGGAGAAGCATGGTCTTAGATTTTTTTTTGTTTTTTTGAGGTTGCATCAAAAAAAAAGGACGTGTTTGCACAGGATTAAAGTCACCATGAATTCGAAACTGATCGTTTTTTTTTTTTAACTGGAATATTGTAGTATTTATTATAAATGATTTATCTGTGCACATCATTATTTTTTTTTTTAAATAAATCACGTGCCCTTATAATCTTTAATTCTCTTCTCTTCTCGCGAGATGTAGGAGAGTGGTGGAGGGTGTGGTGGGGAAGAACGAGCGTCTTAGACTGTCCACTTAAATTTTCTTTTTTTCTTTTTCTTTTCTATTTTTCTTGGTTATTTAATTGTGAATTTATATATTTTTTTAAGGATTAATCTTTTTCGTTTGGATTTGGAACTAGACGGCGAGTGCGAGGATGGCGTCGCTCCCAGGTGAGCGTGCGCCATCTGTTTCACTTCGCCATGGAGTTAGGTGCGTGCCGGAGCAGGGAGTCACGGTGGAGAGCGTGCTGTTAGCGGTAGGCGAACAGGTCGGTTGTGAAAATATAGCCTCGGCATCAAGAATGAATAAAGCAATAGTTGTTTTTCTTAGAGAAGAACCACTAGTTGCTCGACTAATTGATAGCGGAATAGTGATAAACGGAACTTTTTGTTCAGTTTTTCCTTTGGCCACGCTAACAACTGAAGTCACTATTTCAAATGTACCGCCTTTTATTTCCGATGATGTTATTGAACGGGAACTCGTTCGGTATGGTAAGATTGCTAGTCCAATCAAAACCGTATCGCTAGGCTGCAAGAATGCAGCTTTAAAGCATGTAATGTCGTTCAGGAGGCAAGTTTTCATGTTTCTGAAGGAATCAATGCTGGACATATCGTTTCGTGTTTGGAATGACGGTAAGTCCTTTATGGTCTATGCTACTGCTGGCGTAATGAAATGTTTTGAATGTGGCGATATTGGCCATAAACAGGTTGGTTGTCCTCATAAGGCTCAAGCAAGCATGAGTGGGGTTGATACAGTTAAACGTATAGTGCGTGATGAGAATGAACAGATTAAGGAAAGAGCTCCTGAAGAAGTTGAAGTGGTAAAAAGTTTGAGTTCATCAGAAGAGGGCATGGTGCGGCTAAATAAGAATGTGGATGGAGATTTAGAAGACCAAGGAAAAGTAGTAGAGGAACAAAGTCGGTCTGTAGAGGTAGATAGAACTGTGGAAGGAAAGAGTTTGAGTGCTGAGGTTGAAAGTATGAGTGAGATTGTAATGTTGAGTCATGAGATGTTACAAAATCCAAAAACGCAGATAGCTGAGATACCACATGACGATAATAGGCATTTAGATGGAACAATAACAGACAACCCAAAGGAAATAATGAGTATTGCAGTGGATTTTTATTCTGAGCTTTTTAAATCAGAATATTGTGATAAGAGTGCTGATGAATTGTTTAAGGATTTGCCACAATTGCAAAATGAGCAGAAAAAGACTATGGACTGTGATATTAGTCTTGAAGAACTCACAAATGCAGTTAAAAAGCTTTCACTGGGACGTGCGATTTTGAGGAGAATCGGTGGATTGAATTATGATGTACAGCTCTTCTGGATAAAACTTCAAGAAGTGGACTTAACAAAGAGTACTCCATTTTATTATACCGTGTTACAAGCATGGAAAAAGACGTTCAATATTAAAAGAGAACTTGAGGTTTCTAAATACTGGGTTATGGAAGAGCCGATTCTCTACAATCCAGTGATTCAAGGTGTGCTGATATCTTCAAAAAGTATCCAAACTAATATGTTGAGGAACAAGTGCACAAAATTACGGGACCTGATGAATCATGATGGTTGGAAGTCTCTGGAGGAGGTAATGGAATTAACTGGATTGCATTCTAAACAGTTGGCAGCAAGAGTTTTAGAAGAAGTTCAAACTTCATTGCCAGGACATTACAGACAAGTGATTAAGAGTAATTTGAATGAACAGATTGACTTTATTCACCAAAAACTGTCGACCTTTCCTGTTCATGAATCTGAAGACTTGCAAAATGAATCATTTTTAGAAGTACCTGAGAATCTTGAGATATGGACATTTAAAGAAATGCCTAAGAAAGTGATATACAAAGTATGTGTGAAAACTGTTCATAAAGAGGCACTAAAAGAGCGGCAACCATCGAGGTGGACAAGGTGGTTTGGGATGTGTTTTCCCTTGCGAGATCAATGGAGGATCCTGTATAAATATCCATCACAAAAGCGAACTGGAGATCTGCAATGGCGCATAATTAATTGTGCAATAGCTACAAACAGATATGTGTCTCGCCTTAATCCAGCAGTAGGGGGAGAATGTAATTTCTGTGGTGAAGAAGAAACTATTGAACATATTTTTCTGCATTGTGAACGTTTAGAAGGGCTATTTACACTGTTAACAGAATGGTTTAGAGGGTTAGGTGAAGATTTCTCTGAATGTGGTTTTATTGGAAGTGTAAAATATAAAGTCTCAAAAAAGTTAATATTGTGTCTTTTATGTTTTTGGGTACTGCGAAATTGTCAATTTGGAAAACAAGAAAAAGTAAATTACTGGGTGTAGGTGCAGTGAACCCTGAAGGGATGATGAAAGGTTTAATTGCAAGCAGA
>TU243430
ATTTGGAACTAGACGGCGAGTGCGAGGATGGCGTCGCTCCCAGGTGAGCGTGCGCCATCTGTTTCACTTCGCCATGGAGTTAGGTGCGTGCCGGAGCAGGGAGTCACGGTGGAGAGCGTGCTGTTAGCGGTAGGCGAACAGGTCGGTTGTGAAAATATAGCCTCGGCATCAAGAATGAATAAAGCAATAGTTGTTTTTCTTAGAGAAGAACCACTAGTTGCTCGACTAATTGATAGCGGAATAGTGATAAACGGAACTTTTTGTTCAGTTTTTCCTTTGGCCACGCTAACAACTGAAGTCACTATTT

Function

NR:

description
gag-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_03814516_03818892.mRNA False 2712 mRNA 0.38 3 3813420 3818939
TU243430 True 307 lncRNA 0.48 1 3813907 3814213

Neighbor

gene id symbol gene type direction distance location
CI01000050_03807697_03808793 CLCN5B, CLCN5 coding upstream 4550 3805143 ~ 3808870 (+)
CI01000050_03679119_03683710 NA coding upstream 129251 3679080 ~ 3684169 (+)
CI01000050_03641769_03645039 NA coding upstream 168311 3639187 ~ 3645109 (+)
CI01000050_03599274_03618237 SLC25A37 coding upstream 194380 3599274 ~ 3619040 (+)
CI01000050_03573096_03586434 ENTPD4 coding upstream 226109 3573096 ~ 3587311 (+)
CI01000050_03938328_03956122 RHOBTB2 coding downstream 119389 3931890 ~ 3957044 (+)
CI01000050_03989489_04121180 NA coding downstream 169318 3988257 ~ 4121393 (+)
CI01000050_04122649_04127014 EGR3 coding downstream 303710 4122649 ~ 4127045 (+)
CI01000050_04159232_04161131 NA coding downstream 340072 4159011 ~ 4161131 (+)
CI01000050_04190820_04204792 BIN3 coding downstream 371881 4190820 ~ 4205923 (+)
G214506 NA non-coding upstream 50897 3758375 ~ 3762523 (+)
G214503 NA non-coding upstream 60152 3753042 ~ 3753268 (+)
G214501 NA non-coding upstream 74878 3738191 ~ 3738542 (+)
G214500 NA non-coding upstream 81247 3731968 ~ 3732173 (+)
G214496 NA non-coding upstream 84610 3728533 ~ 3728810 (+)
G214567 NA non-coding downstream 24441 3843380 ~ 3843726 (+)
G214601 NA non-coding downstream 50341 3869280 ~ 3869506 (+)
G214605 NA non-coding downstream 54216 3873155 ~ 3903728 (+)
G214632 NA non-coding downstream 85836 3904775 ~ 3905081 (+)
G214575 NA non-coding downstream 88170 3907109 ~ 3961365 (+)
CI01000050_02852118_02864754 RNF122 other upstream 947598 2852118 ~ 2865822 (+)
G212927 NA other upstream 1038287 2774839 ~ 2775133 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other upstream 2116012 1691374 ~ 1698973 (+)
CI01000050_01296683_01297763 SELENOK other upstream 2513814 1296365 ~ 1298255 (+)
G214717 NA other downstream 288643 4107582 ~ 4108280 (+)
CI01000050_04591548_04592778 NA other downstream 772616 4589926 ~ 4593049 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 1588646 5407585 ~ 5409417 (+)
G215539 NA other downstream 1810671 5629610 ~ 5631203 (+)

Expression


Co-expression Network