CI01000050_04122649_04127014 (EGR3)


Basic Information

Item Value
gene id CI01000050_04122649_04127014
gene name EGR3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 4122649 ~ 4127045 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_04122649_04127014.mRNA
GTAAACTAGCGGACAAGATCCCTATTACCATGAGCAGTTTAATCAACACCATACCTGACAGTCTCTATCCAGAAGAAGACATTCCCACTTCTATGAACATTTTCACAAACCCGGACTCCATTTCGCACTACTCGCAGATGAATACAGATAATATCATGGACTTGGGGATGGGCGGCGAGAAGAACAGCGGAGAAATCCAATATGGCTCTGGGAGTTTCCAGTCCGGTCGAAGCGGACAAACCGTCACCTACCTGGGCAAGTTTGCGTTTGACACCCCTCCATCAGGCAGCATCGGAGGCTCGGGCTGGTGTCCCGACAACAACATCATCAGCCTGGTGAGTGCGGGAATCCTGGGGGTGTCACCGTCACCTGGCAACATCACTACCCAGACGTCTTCGTCGGGCGGCAGCATGGGCGGACAGTCGTCAGACATGGAGCAGGTTTACGCGCCACCCCTTCCTGCCTACTCGACTTGTGGAGAGATATACCCAGAACAGGTGGCGTTCCACCACAGCCCGGCCACGTCCTCATCTTTGCCCTACCCGGGCTCCGACTACCACACCACCTCCAAACCGGGCATGGACGGAAGTCTCTTTTCCATGATCCCAGACTACAACCTCTTCCACCACCAGGGAGACGTAGGGGTAATGGAGCATAAACCCTTCCAAACCATGGACCCTATTAGAGTGAACCCACCTCCCATAACTCCCCTCGAGACCATTCGAGCCTTTAAGGATAAGCAACAGATCCATCCCGGCTTTCTCGGTGGGCAACAGCACGTTTCCCAACACCATCAACCCTCTCAGACACTTGCTCTCAAACCCATTCGACCAAGAAAGTACCCTAACCGGCCAAGCAAAACTCCCGTCCACGAGCGACCGCACGCCTGTCCGGCGGAAAACTGCGACCGCCGCTTTTCGAGATCAGACGAGTTGACGCGCCACCTGCGCATCCACACGGGACACAAACCCTTCCAGTGCCGCATCTGCATGCGGTCCTTCAGTCGCAGCGACCACCTAACGACGCACATCCGTACGCACACCGGCGAGAAGCCGTTCTCGTGCGAGTTCTGCGGACGCAAGTTCGCAAGGAGCGACGAGCGAAAGAGGCACGCCAAGGTGCACCTGAAACAGAAGGACAAGAAACCCACGGACAAGGGCAGTAGCGCTGGGGCCGGGGGGAGCCACACTTCTCCTCCCAGTTCCTGTGGGAGCGCGGGACCCAGCAGTGCCAATATCATGACCGTCACCACTTGTGCATGAGATGGACTTGCAAAGTAAGACTGCGAGGAGA

Function

symbol description
egr3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in hindbrain; myeloid cell; optic tectum; and telencephalon. Orthologous to human EGR3 (early growth response 3).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K12497 EGR3; early growth response protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_04122649_04127014.mRNA True 1293 mRNA 0.56 2 4122649 4127045

Neighbor

gene id symbol gene type direction distance location
CI01000050_03989489_04121180 NA coding upstream 1256 3988257 ~ 4121393 (+)
CI01000050_03938328_03956122 RHOBTB2 coding upstream 165795 3931890 ~ 3957044 (+)
CI01000050_03814516_03818892 NA coding upstream 303710 3813420 ~ 3818939 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 coding upstream 313779 3805143 ~ 3808870 (+)
CI01000050_03679119_03683710 NA coding upstream 438480 3679080 ~ 3684169 (+)
CI01000050_04159232_04161131 NA coding downstream 31966 4159011 ~ 4161131 (+)
CI01000050_04190820_04204792 BIN3 coding downstream 63775 4190820 ~ 4205923 (+)
CI01000050_04275924_04277061 NA coding downstream 148879 4275924 ~ 4277647 (+)
CI01000050_04281992_04287535 NA coding downstream 154947 4281992 ~ 4287802 (+)
CI01000050_04303341_04330327 DNM1L coding downstream 176296 4303341 ~ 4331241 (+)
G214727 NA non-coding upstream 5540 4116809 ~ 4117109 (+)
G214725 NA non-coding upstream 7048 4115366 ~ 4115601 (+)
G214719 NA non-coding upstream 12759 4109495 ~ 4109890 (+)
G214575 NA non-coding upstream 161284 3907109 ~ 3961365 (+)
G214754 NA non-coding downstream 139323 4266368 ~ 4266683 (+)
G214767 NA non-coding downstream 140059 4267104 ~ 4267427 (+)
G214770 NA non-coding downstream 144220 4271265 ~ 4271510 (+)
G214771 NA non-coding downstream 144543 4271588 ~ 4271847 (+)
G214798 NA non-coding downstream 225290 4352335 ~ 4352724 (+)
G214717 NA other upstream 14369 4107582 ~ 4108280 (+)
CI01000050_02852118_02864754 RNF122 other upstream 1256827 2852118 ~ 2865822 (+)
G212927 NA other upstream 1347516 2774839 ~ 2775133 (+)
CI01000050_04591548_04592778 NA other downstream 464510 4589926 ~ 4593049 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 1280540 5407585 ~ 5409417 (+)
G215539 NA other downstream 1502565 5629610 ~ 5631203 (+)
G215773 NA other downstream 2534143 6661188 ~ 6665703 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036031 egr3 coding NC_007119.7 CM002892.2 50727220 ~ 50733508 (+)