G214575


Basic Information

Item Value
gene id G214575
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3907109 ~ 3961365 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU243471
ATTTTCATTTTTGGGTGAACTGTCTTTTTAAGGTTCCGATGAAACGGAAGTAGTGATGGATGTTTTTTTCCGTATCGTGATATACATGTGAAATGATTTATGTAGGGCGGGGACTTGGTTCTATCCGTCGGTTATTGATTGGATGGAGGCAGATATGAACGTCAAGAATGCCATTGTAAGAAAGGAGCGGGTTTAAGTGCACTAAAATTTGGAAAGAAATTAATACTTTTATTCTGCAAGGATGTACTAAATTGATCAAAAATGACATTTATAATGTTACAAAAGATTTCTATTTCAAATAAATGCTGTTCATTTGATCTTTCTATTCATAACGAAAAAAAAATCTTGGAAAAAAATATTAAGCAGCACAACTATTTTCAACATGGATAAGACATTTTTATTAAGCACCAAATCAGCATGTTAGAATGGTTTCTGAAGGATCATGTGACACTGAAGATTGGAGTAATAATGCTTTAAAAAAAAAAAAAAAAAAATCAGCTTTGCATCACAGGAATAAATTACATTTTAAAAACTATTAATATGAAAAAAGTTATGTAAAATTGTAAAAATATTTCACAATTTCTGTATATATATCGGTGGTGTGTTTTGATCAAATAAGTACAGCCTTGGTGAGCATAAGAGACTTCTTTCAAACGTAAAGATGGTAGTGTATTTTCTGTGGTAATAAACATTATACCTGCTGATAGGGCTTAACATGTTTTGCCACTTTATGTCCTTTTAGTCCTGCTCTTCAAGAATGTTCAGGCTGGATGTTACTGGTGCACAACAGACTAAATATTTGTTTTTCCTGCACACTGTGGTATAGATTTTTGCTTATTTGTTAGACTGAAGCAGTCTTTCTTCTCTATTTCCTGTTAATAATTGTAACCTCACATGTTATCAGCTGACAAGTGTGCAAATCGAAAATGATTATGGGCTTACACAAAATCTGCATTTACTGACGTAATGTCACGTATTTGTGCTATCGCAAGATGAAGTTCAGGTTTACATCAAGATTGCCTCCTGAAAGCTGCATTTTTGTCTCGATAACAATATTCTGGAAAACAGCAACAACCTGTAATATTATAACCAGACACTTCAAAACAGGATCCCAGGTGAACAGTCACGCTGGGCTTCTCTACAGGGAATCTAAAGAGTGCCTCAACACTGCTGATATTCAAAGTGTGGGCACTAGCTGCTGTCTTTACCAAAGTAAGCTCACATTTGCTTCATAAGGTGGATGATATCAATCCACACACAGAAACACAGTTTTAAATGTTTCCAAATAGCTTTTGGATGAGTTTTACGGGCAGGCCCGTGACCATCCCATGAAGCATCACAGCATGTTACATTTAAGTAGTTGTAGAGAGTTTCCTACATCTGCTATATTTCAGCATCCCATTCTAGGGGACACATTAGGGTCTTTAAAATATTAATATAACTAGTAGTAACTTAGGAAAAAGGGTATTTATATGACTATTCTAATACTATAATATACTAGTAAGGAAAAAATAACAGTAAAGCTCCAATTAAATAATGCAATGCAAGGCAGTTTTACAATTTACATTTACATAACTATTTAAGGTGCATCATCTCCCTATATAGGAGAGGAAACCTCACAAGCATGGTTCACATAGACTTAAACCCTTTGCGATTTGAATGTTTCTGATCTAGCACATGCGATAGTTACAGAAGCGAATAGCACCTTAAATACAGAATGACTTATAAATACACTACTTTTTCTAGCACCACATTGACTTCTACAGTGAAAAAAAGGACAGTAAATCACCCTACGGAGAGTAAAAAGCAATCTGTTATGCATTTTCTGCAGTTGTAAACCAATTAATATTAGAGAATGTTTTTTCTGCTTTAATAAATCAAATTAAGAGCTGACCTGCATGTGCAAGGCTGTTGAAGCTGGCATCAAGGGAATGTTGAGGAATATAGTTTTAATTTAGAAACCCAAAAATATGTGTTTGCTTTGAATGTAGATCCAGAATGATAACGATTAATTCCTCTGGTGGGGCAAGCGAAGATTTTTCAGTATCTAAGTATTTGTAATAGCACTCAGGAACATTTGCTGACTCTAGTCATTAACATATAAAGTGTTAAAGTGTGAAGAGGTTTTATCCGAAAGTGTTTCAAGGAATTTGAAAGTTATTTTGGAAATGAATGAATTTTAAGCCCTGGGTATACTTCATTGTTTTACGTGTATGCTAGTGTACATGCAGTCGAACGCACGCACAGCCTTGGAAAGTATATTTCATTTGACTCATACGCATACACAGGAGTAAACATCTTTGTATTCTTTCATGCTAGAGTTGTACAGATAAGGGTACTTTCTAACCTCTTCACACAATCTCTCGTTTATGTAGGCCTCCATTGTCTCTGTAGCTTGCATGCGTTCCGGTCTGTTCTGTTTATGCAGTTTTTCTTCGACTACCTTGTGAATTGACGCCCCCAGGGCATGGTTGCCACCTTGTGGATAAAATAATTACTGCAAAAAAAAAAAATTAATGCGTATGGACGAACTGCGCGTACAAGTACACGCGGTTACAAAAATCCGGCGGTGTGCGTACTCTTCTGATGATGAAATTCACGTCACGTGCACTCTACGCTGACTCTTGTGTACGCATAAAAAGTGCAGTATACAATTTATACATGCATCAATCTGAAGTCTCTACCAATCATCCTATGAAAGACAAGTGTTTAAGTGGCGTACATTGCTACAATTCACAATCACAACGATCTGTTAGCATATGATATGAAAGTTCTGAGTTTTTAAGCTATCATTATAGAGTATATAGTTATGTAACGCTATTATATAAATCAAAGCGAGAGAGATGATATGAATGTACTGAGATATGACAGGTATCATGTGCTATATGCTATTTTCATCTTCCTAGAATTTATTGCTCAGATGTTGCTCTTTCGGGCATTATAGAGTTTAATATCAACTCCCAGAATTCCTTAGCAGAAATGAAAATAGATGAAAATGCAGAAGAAAAATTTGAGAAGCCAGCACCTTAAACAAAAGTCTGCATTCAGTCTTACTGTCTAGGTCTAGGAGAAACAAATGAGATATTAAAGGAGATCCTTCTTGTGATTTTTCCTTCTTATGGGTTTTTAACCATCCCAGATTCGCTCAATTCAGATTGTAGAAAATCTCTGCGAGCAAAATAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGTGATTGTAAGTACTTCAGGTAAGAAGTGAGTAACATTGTGTTCCTAATCAGTTGCTGCAGAGAAGATACCCCATGCCTTAATGTAAAGTACACAAGGAGAGACATATTTGAAATGTAATGATATCCGTTATGTATTATGTGTGTTGTACACCAAATAGTTGCATAATGTGTAAAAACTATGTCATATTGTTTGGTAAAGATGGTTTATTTGTCTATTTTACTAGCCCATTATTACCTTGTGTATTACCTTTATCTGTATTGTCTTGGTTTTATGTGAACGTGTTATCATACATGTGAACGTGTTATCATACTGCTTCCATTTACAGATGAAGAATATTGAATACAATGACAGAAATGAACAATGATCAGTTAGGTGGACATTTTTAAATCTTGACTACCTTGACATGCTGTGTGCAAATAGGCTAACTAGGTCTGCTATGAATAGTAAAAAATAAAAGATTAAAAGCATATATTCTCTTGGGGACAACTGTGCACTATGCAGCATAATATACTGTGTACTGTATAGTGACCTCTAAACTTAAAGTAATCATGCACTTCCAATCAGTGTTAACCACTGATGCATGTCCTATTTTATTTTACTCTCAGATAAGATACATAATCAGGGGTCTAAGCAGAAAAAAATATACTGTGTGTAATTTAAGAATATAATGAAATCATTAAAAATAACTGCTTTAAAGCCTATAGTAGCTCATTTTATTGAGCTTTAGGTCCTAGTGCCACCATTGCAAAGAAGCACAAACCAGAGTGTCAGCAGCACCTGATGTTGTTTTTGCTGCACAGTTACAACAATGTAGGGCCAGTGCAGCAAAGAAGCCACGAAAGCCTTGAAATCAAAAGACTGAACGAAAAACTTGAATGTTCTCTCATTATTTAGAAGCCTGACATTGACGATTTGTATGGGAAACAGGCATCATTTCCATGAGTTGGTATTGGGGAGGGGGGAGTTTGTATTTTCAGCAAACCTGCAGCATGTATTCATGAAATGTGTAAATACTAGTATTTAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU243471 True 4248 lncRNA 0.35 2 3907109 3961365

Neighbor

gene id symbol gene type direction distance location
CI01000050_03814516_03818892 NA coding upstream 88170 3813420 ~ 3818939 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 coding upstream 98239 3805143 ~ 3808870 (+)
CI01000050_03679119_03683710 NA coding upstream 222940 3679080 ~ 3684169 (+)
CI01000050_03641769_03645039 NA coding upstream 262000 3639187 ~ 3645109 (+)
CI01000050_03599274_03618237 SLC25A37 coding upstream 288069 3599274 ~ 3619040 (+)
CI01000050_03989489_04121180 NA coding downstream 26892 3988257 ~ 4121393 (+)
CI01000050_04122649_04127014 EGR3 coding downstream 161284 4122649 ~ 4127045 (+)
CI01000050_04159232_04161131 NA coding downstream 197646 4159011 ~ 4161131 (+)
CI01000050_04190820_04204792 BIN3 coding downstream 229455 4190820 ~ 4205923 (+)
CI01000050_04275924_04277061 NA coding downstream 314559 4275924 ~ 4277647 (+)
G214632 NA non-coding upstream 2028 3904775 ~ 3905081 (+)
G214605 NA non-coding upstream 3381 3873155 ~ 3903728 (+)
G214601 NA non-coding upstream 37603 3869280 ~ 3869506 (+)
G214567 NA non-coding upstream 63383 3843380 ~ 3843726 (+)
G214719 NA non-coding downstream 148130 4109495 ~ 4109890 (+)
G214725 NA non-coding downstream 154001 4115366 ~ 4115601 (+)
G214727 NA non-coding downstream 155444 4116809 ~ 4117109 (+)
G214754 NA non-coding downstream 305003 4266368 ~ 4266683 (+)
CI01000050_02852118_02864754 RNF122 other upstream 1041287 2852118 ~ 2865822 (+)
G212927 NA other upstream 1131976 2774839 ~ 2775133 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other upstream 2209701 1691374 ~ 1698973 (+)
CI01000050_01296683_01297763 SELENOK other upstream 2607503 1296365 ~ 1298255 (+)
G214717 NA other downstream 146217 4107582 ~ 4108280 (+)
CI01000050_04591548_04592778 NA other downstream 630190 4589926 ~ 4593049 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 1446220 5407585 ~ 5409417 (+)
G215539 NA other downstream 1668245 5629610 ~ 5631203 (+)
G215773 NA other downstream 2699823 6661188 ~ 6665703 (+)

Expression


Co-expression Network