G214506


Basic Information

Item Value
gene id G214506
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3758375 ~ 3762523 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU243379
TTGACCTGTCAGCACAGAAAGAAACCCCACACATATACACAGGTATATATGTATATGGGTTCAGTATAAAGTGCAAATCAATCACAAATTTCCATCGTGTGTAACATTAGGGACGAAAAAATAGAATGCCTTGAATAGAATGCCTTGCAAAACAATCTTTTCCTATTTTGGTTTCATACTGCATTTTAAAAGGAAAAAAAAAAAGAAAGAAAAAAAAACATTGAATCTTAACATTTGAACATAAACAGGAATATGAGTGATATAAGTGGATTCAAGTTTTGAGAGGAGAGAGTACCATACAGTTTAATGGCTTGTGTAGCCTATAGTCCTCAGGGCCCTGGATCAAAGAGGAGAAATCAGAAACAATGAAGGACCTGTAGAAACAGATCTCTTCTATTGCAGTGCATCCTGATCTCTCTGGTTATGATGTAAAATGACAATATTAATAAGCACTAAACTAACCTGAAACATGTCTGGGACAATCTGATCACACAGAACGTCAATTTCCAATCATTCCCGCTCACTACATTCTAAACTATTTCTATAACGCAGGCAAAGAACGTTCGATTCAAGTCTAAGACTTGAAGTCTAGATGATTCCTTGAGGCAGTGGTTATATAAACTTTAAATTTGGCAACAAGAAGGGTCAGTCTCCAAGCTCTGCTAATCCACCATAAATCGTGATAAGGACACAATGCTGTTCAAGTTCAAATGACCAGAGGGCTGCACTAAACTTTCAGCGCCGTAGGCACCCCGTTGCACCAAATACAGACATTTGATAAAATATACATTCTCTGAAGTTTTACAAAATCCATTAGAACTTTGAAAATTCTCTGAATCACAATATGAATAGAATGGTAAGCTACATGAGAGAGGCTTTGAATGAGAAAAAAAAAAGCCTTATATCCACAGCAGTCTAACAAATGCAATGTAATAATTTAACAAAATAACATACATTTACACTAACATTTCCCTTTGATTCAGTAACAGAAGAAAACTAGTGATCTTCCGAACAGCGCCGAAAATCCAACTTTAATGCTACTTAAGAGTAGGTCGCCAGCATCTTTTTAAACACAAAATCAGATGTCTTTGAGCTGGCTTGAGGCAAACGTCTGCACTCGCTGCTGTTTCTCTGGAGATGGTATGGACACCTTGTTGCTGAGATACCAGAACTGCGGTTGAAAATGGTAATGCATAATTGAGTCACTGGTCATGTTCATCATGATTCGCACACAGTGAAGGTTGAACAAATCGATGGGATTTTAATTGAAAAATAGCTTTAGCATTAACACAGTGGGGTTGGAAAACAGTTTAGCAGCTTTGCTTGGTACAGGTACTTCCTTGGTGTTTAATAGATTGCGATATTATCATACCCCATTTCCCAAACAAAAACAAAGGAAAAAAAAAAAAAAAAAATCCTCACTATGCCACTACATCCCTGCCTGTTCAACAAGAATACAGCAGCTATTCTGGTGTGTTTGAGCAGAATCTGATTATGCTTCAATGCCCTTTTATAGTGGTCCTATGAGACAGAAAGTGCATATATTATTATAACTACACATATACACACACACAGAGAGAAAGTGAATTAACATTTTGGCCAGAAACAGGGAAGTCAAATAAAGAAATCAGAAAAAAAAAAGGATAACTGGGGGGACTGGGGATCTGATTTCATATGGGTGAAGAAAAAAGCTACTGCTTAAGTCTCAAAACTTAAACGGCCCTTTTTCCGCTTAGGGCTCGATAACATGGATTTTAGTTTAAAACCTTTCTAGCGATTATTGCATAGTTTGGTGAATTACTTTTAGATTTGCAGATCATTTGGTTTAAGGAAAAAACAGTCATTCTGCCCCTCCGGTTCTTCTCTCTCATTACTCTTTGGGTCCAATTCAATCAAACTGCTGTATTATCACCACAGTACCAATATGGCGCCAGTGTAAGTTCACCATAAAACAAGCCGTTTAATGGCTAGGCTGTGTTTTTCAAAAGAATTGGGACATATTAAGGGATGCAGATTGGTCATTTTAATGGTTAAATCGCTCAGTGGTGAAATGGCTTCTTTGCTATGGAATTTATTTTTGGACGGGACTAGTCAAAAAGTGGTTTTGCGGTAGTTTGATTGGATTTGGCCCTCGCTCCTCCATCATTCCCAAGCCAAACGCTGCCCTCCAGTCCTTCCTCAAGAAGCACTTACAAAGAGATCTTCCCCATTCACCCTGGGTAAACACTCTGAGAGAAACAGGCCTTTCTGAAACGTTGTATATTGCATAGTGTCGAGAATGGCTCCGGAAAACACTTTGCAGCGACTGCCCCAAATTAACGTGTACGATGGCTGAACCGCATCGCCCTCCAGCGCTATGAAATACTGGATGTCAGTTACTCTGTTAAAGCTAATGATATACTCTATATAGCTGATTAACCCTGAATGTATACACAGCATGTGGCAATGCTCAATAAACTTTTGCATTATAGTGGTCCCATATAACATTCACCTGACTCATATGACCAGCGTGTTCCCCCATGACCAGCACAGAGTCATTACATGGGTCTTGTACAGTCAACTCAGAATGACTAAATAAAGTGATCGATTAAATAAATTTAAAATAGCTCCCAAAAACGGATGCCTAAGCAATTAAAAAGCACAATATCTGTAAACCGATGCTTGCTGAATGAACTAATATTGCCCACAGAAATGTAATAAAATAAACATTTAAATAATACAGTAAGAAAATAAATATTAATAAGTCAATTAATAAGTTTTTAAATAGACATTTAGTTTTTTTAGGGTTTTTTTATGGGTTTTTTTGTCGTCTCAGCAATGCTGGGAACAGCGTGCTTGAACTCACTTCTGCATGTCATATTCACCAGGGAGTAATTTGTTCATCTCTCCAATAAGTTGGCCAAAATATGTGTTTAGACATAGCGCTAACAATGCGCTCAGGGCTTCGAACTGAATTTCCTCTCAGAGTTTATTTGTACTGCACTACTTGAACAGATCATAAGTAGAGAGACGATCCAAGAGTCAAGAAAATGTTTTCGAACAGTGGAAAAAAAAAGCTCCTGTAGGTCTACAGAACGAAGCCGAAGGAATTTGAAGAGAAGTTTTCTCTCCCTTTTTTTTTTTTATAAATAATGATTGGTCGTCCAGTGTGGATCGCTGACATCTACTGTTGCTGTGCTAGACGCTTATGATTTACGGCGTTTGAAGTGAACTTCAGTTTTTTGGTATTTTAATGAATTCCTGCACATAGATCTTTAAAGATAGCTCTCGCCAAATGGGAGAGTTTCACAAAAAGGCTAGTGGCAATTTGAGATTAACAGCTAAAGTAGTAGTAAAATATCTGTTAATAAATAAATAGTACACTCTTATTTCTATAACACATGCCAACTATTTCACATCAACGCTAGATTCAGTTTATATACAGATACATTTTCTTTGCTGTAATCTCTGTAAGATATATTTCATATACAAATGGCTATTTATTGTTTTTTTTTATTATTATTATTTTCGATGACTCCCACTGGGTTTCACGACGACCTTGACTTGACCTACTCACGGATCGGTCTGTAAACCCTACCGATTTGCCCTCGAAGTCCCGGTAACGCGTGAAACTCTTTCCGTCGAATATGAAGTGATAAACAGAGAATTTGACATTCGAGATGTTTTCGCACTGGTGCATGCCTTTTTCCAGTTGAGAAGGAATGTGTCCCTGTATAGCCTCAGAAAATAAACCACTGTTTTGTCTTGCTTTCTTTTTGTGTGTGTGTGTGTGTGGTGTGTGTGTGTGTGTGTTTTCACTTTGCGTTTGTGTATGTGTGCTCGATGGCTAAGTTTGGACTGGCAAATTGGTCTGAAGTTAAGAGCTGTCACCAATGTTGCGTTTCTTGCCAAAGAGATTCGAGGCATCTCTGTTGCGTAGATTTGGCTGGTTCTTGTATCCATGGGGACTGACAGACCACCGCCACCCACCACGAGTCTCCATTCCAGTAGGTACTGCAGCAGACGGACACGGCTTGTTCTGCAGTAGTTGGAAGAGCATGGTGATCTCGGGCCCTAATCGGGTCAACAGATTTGCCCTCACCAGGTCCACCGTCTCATCGTCACACTCCATCAAACTCTGCAGTAGTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU243379 True 4129 lncRNA 0.39 2 3758375 3762523

Neighbor

gene id symbol gene type direction distance location
CI01000050_03679119_03683710 NA coding upstream 74206 3679080 ~ 3684169 (+)
CI01000050_03641769_03645039 NA coding upstream 113266 3639187 ~ 3645109 (+)
CI01000050_03599274_03618237 SLC25A37 coding upstream 139335 3599274 ~ 3619040 (+)
CI01000050_03573096_03586434 ENTPD4 coding upstream 171064 3573096 ~ 3587311 (+)
CI01000050_03557372_03567755 CHMP7 coding upstream 190396 3557327 ~ 3567979 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 coding downstream 45174 3805143 ~ 3808870 (+)
CI01000050_03814516_03818892 NA coding downstream 50897 3813420 ~ 3818939 (+)
CI01000050_03938328_03956122 RHOBTB2 coding downstream 175805 3931890 ~ 3957044 (+)
CI01000050_03989489_04121180 NA coding downstream 225734 3988257 ~ 4121393 (+)
CI01000050_04122649_04127014 EGR3 coding downstream 360126 4122649 ~ 4127045 (+)
G214503 NA non-coding upstream 5107 3753042 ~ 3753268 (+)
G214501 NA non-coding upstream 19833 3738191 ~ 3738542 (+)
G214500 NA non-coding upstream 26202 3731968 ~ 3732173 (+)
G214496 NA non-coding upstream 29565 3728533 ~ 3728810 (+)
G213153 NA non-coding upstream 85498 3671892 ~ 3672877 (+)
G214567 NA non-coding downstream 80857 3843380 ~ 3843726 (+)
G214601 NA non-coding downstream 106757 3869280 ~ 3869506 (+)
G214605 NA non-coding downstream 110632 3873155 ~ 3903728 (+)
G214632 NA non-coding downstream 142252 3904775 ~ 3905081 (+)
CI01000050_02852118_02864754 RNF122 other upstream 892553 2852118 ~ 2865822 (+)
G212927 NA other upstream 983242 2774839 ~ 2775133 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other upstream 2060967 1691374 ~ 1698973 (+)
CI01000050_01296683_01297763 SELENOK other upstream 2458769 1296365 ~ 1298255 (+)
G212184 NA other upstream 3324169 433684 ~ 434206 (+)
G214717 NA other downstream 345059 4107582 ~ 4108280 (+)
CI01000050_04591548_04592778 NA other downstream 829032 4589926 ~ 4593049 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 1645062 5407585 ~ 5409417 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G51350 stc1,LOC107747716,LOC107665189,LOC107559448,LOC107710824,LOC107553168,LOC107678391 non-coding NC_035902.1 CM008305.1 11220468 ~ 11223312 (-)