CI01000050_00851621_00899726 (MIB2)


Basic Information

Item Value
gene id CI01000050_00851621_00899726
gene name MIB2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 851526 ~ 901164 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_00851621_00899726.mRNA
TGATAAAAATATGCGAAAAGAAGTCAGGACTCCAGCAGTAAAACTTTATTGCACGTGATGCAAAAGGATCAAAATAGATGATGGTATGGAAGATGATGGGATTAGGGATAGCGTTCGGAGATTATCCAACATATGGAGTCCTGATTGGTAAACGTGGAGTCACGACTGACCTTTATTCGACTTCAGTTATAGGACGGAGTTTTAAGGGAGTATTTGGTGCAAACAGCTGGCATATGTTAGCTTATTTAATTAAAGAGACTCCCCTACTCGGATCCCTTCCGCTCCCAGCGCCTCGACCCCAAGCAGCGAGCGCTGCCGTCCCCACGGCCCCCGTCCCGCGAGCTCACCGGAAGCATAGTGAAGCAGGACACAGCAGCCAGCCGGCGCGCGGCAGCATGGAGGTGGGCATGCGCGTGGTCCGCGGCGTGGACTGGAAGTGGGGCAACCAGGATGAAGGAGAGGGGCATATTGGCACGGTGGTGGAGATCGGCCGGCAGGGCAGCACCACCACGCCCGACAAAACTGTGGTTGTGCAGTGGGACAGCGGAACTCGGACGAACTACCGCACCGGCTACCAGGGTGCATACGACCTGCTTCTGTATGACAACGCACAGATAGGTGTCCGACATTCAAATATCATTTGTGACAGTTGTAAGAAGCACGGCATTATGGGAATGCGATGGAAGTGTAAGGTGTGTTTCGATTACGACCTGTGCACTCAGTGTTACATGAACAACAAGCACGACCTGACGCACGCCTTCGAGCGCTACGAGACGGCGCATTCACAACCAGTGAGCTTGACGCCGAGGCAGAACCTGTCCAGAATCATCCTGAAGGGAATCTTCCAGGGTGTGAAGGTGGTCCGGGGGCCTGACTGGGACTGGGGCAACCAAGACGGAGGCGAGGGGAAGGTTGGGAAGGTGGTGGATATTCGTGGTTGGGATCAGGAATCGGGTCGTAGTGTGGCGAGTGTCACCTGGTCCAATGGAACCACAAACGTCTACAGAATGGGTCACAAGGGCAAGGTGGATCTCAAATACGTGTCTGATGTACAGGGAGGATTCTACTACAAGGAGCACCTGCCCAAATTAGGCGAGCACGCGGAGCTGCAGAGGCAGGAGAGCGCAGACACTCACTCGTTTCAGCAGGGTGATAAGGTCAAGTGTTTGCTGGAGGTGGACATACTCCGACAGATGCAGGAGGGTCACGGAGGCTGGAACCCAAAAATGGCAGAGGTCAATACATTTGCGGTGGGCGAGCTGGTGAAGGTTCTGGATGACATTGACAGTGTGAAGAGACTTCAGGTTGGCCATGGCGAGTGGACAGACAGCATGGCTCCTGCGTTGGGTCAGGTTGGGAAGGTTTTGAAAGTTTATGCAGACGGGGACCTGCGTGTGGCGTTTGGAGGTCAGACGTGGACCTTTAACCCCGCTTGTCTCTCTGCCCAACCTGGTGAGGTTGACGCCAATCTGATGACGGCTGAGAACTCCAGCGAATCAGGAAGTACGGTCATTTCAGTCCTGGAGAAGTTGCTGTCTCAGTCGACAGAGCAGGATCATCCAGGACGGCTGGTTATCGAGGCAGCGCATGGGAGTGCTGCTAAAGTGCGCGAATTGGTGCAAAAATACCCTGACAAGGTGGATATAAAGAACCAGGGTAAGACCGCTCTGCAGGTTGCCGCCCATCAGGGGCACGTGGAGGTGGTCAAGGTTCTACTTCAGGCCAACAGCAGCATTGAAACTAAAGATGAGGATGGAGACGCCGCTCTGCACTACACAGCGTTCGGGAATCAGGCAGAGATTGCGCGTTTGCTGCTCAGTAAAGGAGCCAGTGTGAACCTGCTAAATAACTCCATGTGTACGGCGCTGCACATCGCTGTCAATAAGGGCTTCACGGATGTGGTGAGAGTGCTGACGGAGCACTCGGCAGACGTCAACCTGCAGGATTCATATGGAGATACACCCTTACATGACGCCATTGCTAAAGACTTCAGGAGCATCATTGAGATTCTGACTGTGGTGCCCAATATTGATTTCACCCAGCAGAACAACCGCGGGTTTAACCTGCTGCACCACGCGGCTCTGAAGGGCAACAAACTCGCGACGGAGATGATCTTGGCTCGAGCGCGACAGCTGGCTGACGTTAAGAAGGAAGATGGTTTCTCTGCTCTGCATCTGGCCGCCCTGAACAACCACCGTGATGTAGCTGAGATTCTCCTCAAAGAGGGTCGTTGTGACATCAACATCCGCAACAATCGGAATCAGACGCCGCTCCAGCTGGCTGTGACTCAGGGTCACGTGGCTCTAGTGGCCCTGCTGGTGACGGAGGGGGCAGACGTCAACGCGGAGGATGAGGACGGAGACACGGCCATGCACACGGCTCTCAGCCGACAGCAGCTGGCCACTGTCATGAGCAGCGGGGAGGGCGAGGGTGCTGTGCTGTACGGCCGGTTGTGTAGCTCAGGGCTGATGGGAAACACGGAGCTGAACGTTGGTGCTGCTATCGCTTGCTTCTTGGCACAGGAAGGGGCCGATATCAATTATGCCAACCATAAAGGTAAAAGCCCACTGGACCTGGTCACAGACAGCAGCGTACAAACACTCATCAGGAGCTTCGCGGAAAAACACAGACTTCAGGCCATCACGTGTGGCACGGGCACTAGCAGCAGCAGTCTCAGGCGGGTACACACTACGCCCAACACCATGACCAACCTGGCTGTGCCCAGCGTGACGGGCCCCAGCGAGTGCCTCATCTGCTCCGAGCTCGCTCTGCTAGTGCTGTTCTCTCCCTGTCAGCACAGCGTCGCCTGCGAGGAATGTGCTCACAGAATGAAGAAATGCATCCGCTGCCAGGTGACAATAACAAAGAAAATTCGACAAGACCAAACGGAGGTGGAGTGCAGCCCGAGCTCGGAGAACTCCGAGCAGCACAACCTGCTGGAGCAGCTGCAGTCGCGCTACAGGCAGATGGAGGAGCGCATCACATGCCCCATCTGCATCGACAACCACATCAAGCTGGTGTTCCAGTGCGGCCACGCCTCCTGCATCGACTGCAGCGCCGCGCTCAAAACCTGCCCTATCTGCCGACAGACCATCCGCGAGCGGATCCAGCTGTTCGTCTGACAGAGCCGTGGCGTGGCGATCGTGTGGCCGTTCTCAAAGCGAACTGAAGGGAAGACGGTTGGCTGCTTGTGCTTCATAGTCTGTCCTGTCCCGAGCGTCATCATTTAGCCAGGACTGCGCCGGGCTCTCGTGCGGGACCGGAGGATGTGAGACTTGATTGTCTCGCCTTGAAAATCATCGTGAAATTCGATTCAGGAGAATTTGGACCTTGTTGACAATGTTTCCAAGTAGCATGAGGACGTCTGCTCCGACGACTGGCAAAACATCTGTAACTACAGTATTATCGAGTGAAGGAGAGTTTATCGGCTCATAGGAGATCATCAGATGTACTCCATACTGCTGATTATAGTGAACCGTAACACATACCCAGCATGCAACGTACTGTAAGCTGACATGTCACATCAGCCCGACGCAAAACCTGGGCCATATTTTACCCTAAAATCCAAAGAAAGAAACTGCTTTGTAAGAATATTTATTTTGTGACATTTTCACCCTTAATTCTCATTACTTTGATGAAGTGTTTATGCATTCATGGTAGTACAGTATTTGTTTTACTCTTGCTATAATTTATGAAATGAAACAGAAACATTATTACAGCACATTTACAATGAATATAATTCTCCTCAAAACGTGTCAAATGTCATTTATTATTTTTGTTCATTTGGTTTTGGGGTGAAATATGGCGTGTTTCCGTGTTCTCCAAACACTAACTTCATTCTAAGCCAGATCTGAACCACAGCACTCATCAGTCCCTGAGAATGACGTGAATATCATCGGCCGTGTTTTGTGCCGTCGTTCGTCAGAGAGTGATGTTGTACAGATGCCTGTACCATATGCCTGTACCGTACCACGCGCAGATATAGGATTTACTGAAGCTTTCCACGAGCAAGAGATATACATACTGCATGCTGGTGAGCGTATTATCTACATCATATATTGTGTCACCAATACCATTTGTAGTGTTATAAGTACAGACGACCTGTGATTTCTACCTGTGTGTGATAATGGCTCTGTGTCTGTGCAAGGGTCCGACTGAAAAGGCGCTCAAGACCCTTAAATGCATAAAAGTAGATTAAATTGTGTCAGCAAAGGTGCTGAATGCTTCCCAATACTAGGAGTTGTTTAGTTTTCTCAGGTTCATGCAAGTCAGTTCGACTCAGAGAATGCAAGAAGCTTCCCTCTGTAAACTTTACAAAACGTTCAGCCTTATCCACTGGCATTGCATGACATTATATAAAGTATTTATTAGCCTCATAAACCAGATCTCCCACTGTAATGCTTTGTGAATTGCTTTGTGAAATCACATCACAGTGAATTGGGAACTCTTACGATTTAAAGAAAATTTAATCACTGCTGTCATTATTTCCTCACCCTCTTATCATTTAAATCACATATGTTTTTTCCCCCATTGAACACAAAGTAGTTTTTTTTTTTTTTA

Function

symbol description
mib2 Enables identical protein binding activity. Contributes to ubiquitin-protein transferase activity. Acts upstream of or within several processes, including melanocyte differentiation; protein autoubiquitination; and regulation of receptor internalization. Located in cytoplasmic vesicle and perinuclear region of cytoplasm. Is expressed in inner ear; mesenchyme pectoral fin; and pectoral fin. Orthologous to human MIB2 (MIB E3 ubiquitin protein ligase 2).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K10645 MIB; E3 ubiquitin-protein ligase mind-bomb

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_00851621_00899726.mRNA True 4560 mRNA 0.51 20 851526 901164

Neighbor

gene id symbol gene type direction distance location
CI01000050_00818849_00822703 UBIAD1 coding upstream 28387 818849 ~ 823139 (+)
CI01000050_00770066_00782851 CDK11A, CDK11B coding upstream 68554 770066 ~ 782972 (+)
CI01000050_00753574_00762446 S35E2, SLC35E2B coding upstream 88759 752374 ~ 762767 (+)
CI01000050_00718711_00742201 NA coding upstream 109325 718711 ~ 742201 (+)
CI01000050_00678001_00716978 NA coding upstream 134548 677899 ~ 716978 (+)
CI01000050_00916485_00921744 DCAF1 coding downstream 15321 916485 ~ 921744 (+)
CI01000050_00931338_00939002 DCAF1 coding downstream 30174 931338 ~ 939002 (+)
CI01000050_00967544_00997883 BSN, BSNA coding downstream 66380 967544 ~ 997883 (+)
CI01000050_01002924_01005496 NA coding downstream 101760 1002924 ~ 1005514 (+)
CI01000050_01023375_01033682 APEH coding downstream 122211 1023375 ~ 1034169 (+)
G212294 NA non-coding upstream 23441 827818 ~ 828085 (+)
G212293 NA non-coding upstream 24398 826804 ~ 827128 (+)
G212104 NA non-coding upstream 87091 763998 ~ 764435 (+)
G212269 NA non-coding upstream 104948 745947 ~ 746578 (+)
G212261 NA non-coding upstream 187377 663684 ~ 664149 (+)
G212296 NA non-coding downstream 8649 909813 ~ 910029 (+)
G212366 NA non-coding downstream 270970 1172134 ~ 1176043 (+)
G212376 NA non-coding downstream 294861 1196025 ~ 1201801 (+)
G212357 NA non-coding downstream 331928 1233092 ~ 1233734 (+)
G212466 NA non-coding downstream 431203 1332367 ~ 1336316 (+)
G212184 NA other upstream 417320 433684 ~ 434206 (+)
G212006 NA other upstream 713515 82604 ~ 138011 (+)
CI01000050_00012155_00026251 NA other upstream 825114 12079 ~ 26412 (+)
CI01000050_01296683_01297763 SELENOK other downstream 395482 1296365 ~ 1298255 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other downstream 790639 1691374 ~ 1698973 (+)
G212927 NA other downstream 1873675 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 1941655 2852118 ~ 2865822 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 2903979 3805143 ~ 3808870 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036825 mib2 coding NC_007119.7 CM002892.2 53862745 ~ 53896982 (-)
bowfin (Amia calva) AMCG00002251 mib2 coding CM030136.1 CM030136.1 8957110 ~ 8982144 (-)