CI01000050_00931338_00939002 (DCAF1)


Basic Information

Item Value
gene id CI01000050_00931338_00939002
gene name DCAF1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 931338 ~ 939002 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_00931338_00939002.mRNA
AGAGACGGCAGGCGCCCACCAATTTCACCCCTCGACACACGCGCAGGGTGGTCTACCCCAAATACGGTGGGGTTGATGGAGGCTGCTTTGACAGGCATCTCATCTTCAGCAGGTTTCGGCCGATCTCGGTGTTCAGGGAGGCTGAGGAGGATGAGAGTGGCTTCATGTGTTGTGCGTTCTCAGCACGAGAGCGTTTCCTGATGTTGGGCACGTGTACCGGGCAGCTCAAACTCTACAATGTGTTCAGTGGACAGGAAGAGGCCAGCTACAGCTGCCACAGCTCAGCCATCACACACCTCGAGCCCTCCAGAATATATGACATTCAGACAGGACAGAAAATCCTGACCCTCAATAACCCTGACCTGGCCAACAACTACAAGCGCAACTGTGCCACGTTTAACCCCACGGATGACCTTGTCCTGAACGACGGCGTCATGTGGGACGTCCGCACGGCTCAGGCCATCCATAAGTTTGATAAGTTCAACATGAACATCAGTGGCGTTTTCCATCCCAATGGTTTAGAGGTCATCATCAACACAGAGATCCTCCAGTGGGATTTGAGGACGTTTCATCTTCTTCACACTGTACCAGCGCTGGATCAGTGCAGGATTGTTTTCAACAACAATGGAACCGTCATTTATGGAGCCATGTTGCAGGCCGACGATGAGGATGACATGATGGAGCAGCAGATGAAGAGTCCATTCGGATCGTCCTTCAGGACCTTTGATGCCACCGACTATAAACCCATCGCCACCATTGATGTGAAGAGGAACATTTTTGACCTGTGCACAGACACTAAAGACTGCTATCTGGCCGTCATTGAGAATCAGGACTCCATAAATATGGACACCGTGTGTCGGCTGTATGAAGTCGGGCGCCAGAGACTCGCTGAGGAGGAAGAGGATGAGGAAGATCAGGAGGAGGACGATCAGGATGAAGAGGATGACGATGACTCCGATGATGACATCGATGACATTGACACAGACCCGCTGCTGGCCGAGCTGGAGAACGAGAATAACGGAGACGAAGAGGAGGAAGATGGCGAGCAGGATTTCTCTCCGTCTGATGATGAGGAG

Function

symbol description
dcaf1 Enables estrogen receptor binding activity and histone kinase activity (H2A-T120 specific). Involved in cell competition in a multicellular organism; histone H2A-T120 phosphorylation; and negative regulation of transcription by RNA polymerase II. Located in fibrillar center and nucleoplasm. Part of Cul4-RING E3 ubiquitin ligase complex. Colocalizes with COP9 signalosome.

GO: NA

KEGG:

id description
K11789 DCAF1, VPRBP; DDB1- and CUL4-associated factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_00931338_00939002.mRNA True 1076 mRNA 0.52 8 931338 939002

Neighbor

gene id symbol gene type direction distance location
CI01000050_00916485_00921744 DCAF1 coding upstream 9594 916485 ~ 921744 (+)
CI01000050_00851621_00899726 MIB2 coding upstream 30174 851526 ~ 901164 (+)
CI01000050_00818849_00822703 UBIAD1 coding upstream 108199 818849 ~ 823139 (+)
CI01000050_00770066_00782851 CDK11A, CDK11B coding upstream 148366 770066 ~ 782972 (+)
CI01000050_00753574_00762446 S35E2, SLC35E2B coding upstream 168571 752374 ~ 762767 (+)
CI01000050_00967544_00997883 BSN, BSNA coding downstream 28542 967544 ~ 997883 (+)
CI01000050_01002924_01005496 NA coding downstream 63922 1002924 ~ 1005514 (+)
CI01000050_01023375_01033682 APEH coding downstream 84373 1023375 ~ 1034169 (+)
CI01000050_01039500_01042679 TLR9 coding downstream 100498 1039500 ~ 1042799 (+)
CI01000050_01048195_01109752 NA coding downstream 108968 1047970 ~ 1109752 (+)
G212296 NA non-coding upstream 21309 909813 ~ 910029 (+)
G212294 NA non-coding upstream 103253 827818 ~ 828085 (+)
G212293 NA non-coding upstream 104210 826804 ~ 827128 (+)
G212104 NA non-coding upstream 166903 763998 ~ 764435 (+)
G212269 NA non-coding upstream 184760 745947 ~ 746578 (+)
G212366 NA non-coding downstream 233132 1172134 ~ 1176043 (+)
G212376 NA non-coding downstream 257023 1196025 ~ 1201801 (+)
G212357 NA non-coding downstream 294090 1233092 ~ 1233734 (+)
G212466 NA non-coding downstream 393365 1332367 ~ 1336316 (+)
G212473 NA non-coding downstream 419601 1358603 ~ 1363929 (+)
G212184 NA other upstream 497132 433684 ~ 434206 (+)
G212006 NA other upstream 793327 82604 ~ 138011 (+)
CI01000050_00012155_00026251 NA other upstream 904926 12079 ~ 26412 (+)
CI01000050_01296683_01297763 SELENOK other downstream 357644 1296365 ~ 1298255 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other downstream 752801 1691374 ~ 1698973 (+)
G212927 NA other downstream 1835837 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 1903817 2852118 ~ 2865822 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 2866141 3805143 ~ 3808870 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038710 CABZ01113599.1 coding NW_003336847.1 KN150679.1 255 ~ 12836 (+)