Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000050_00967544_00997883 |
| gene name | BSN, BSNA |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000050 |
| NCBI id | null |
| chromosome length | 7556436 |
| location | 967544 ~ 997883 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| bsna | Is expressed in brain and forebrain. Orthologous to human BSN (bassoon presynaptic cytomatrix protein). |
| bsn | Predicted to enable dynein light chain binding activity and transcription corepressor binding activity. Predicted to be a structural constituent of presynaptic active zone. Predicted to be involved in several processes, including presynaptic active zone assembly; regulation of ubiquitin protein ligase activity; and retrograde axonal transport. Predicted to be located in several cellular components, including axon cytoplasm; cytoplasmic vesicle; and excitatory synapse. Predicted to be extrinsic component of membrane. Predicted to be part of cell surface. Predicted to be active in several cellular components, including Schaffer collateral - CA1 synapse; cytoskeleton of presynaptic active zone; and hippocampal mossy fiber to CA3 synapse. Predicted to colocalize with synaptic membrane. |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000050_00967544_00997883.mRNA | True | 11805 | mRNA | 0.48 | 11 | 967544 | 997883 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000050_00931338_00939002 | DCAF1 | coding | upstream | 28542 | 931338 ~ 939002 (+) |
| CI01000050_00916485_00921744 | DCAF1 | coding | upstream | 45800 | 916485 ~ 921744 (+) |
| CI01000050_00851621_00899726 | MIB2 | coding | upstream | 66380 | 851526 ~ 901164 (+) |
| CI01000050_00818849_00822703 | UBIAD1 | coding | upstream | 144405 | 818849 ~ 823139 (+) |
| CI01000050_00770066_00782851 | CDK11A, CDK11B | coding | upstream | 184572 | 770066 ~ 782972 (+) |
| CI01000050_01002924_01005496 | NA | coding | downstream | 5041 | 1002924 ~ 1005514 (+) |
| CI01000050_01023375_01033682 | APEH | coding | downstream | 25492 | 1023375 ~ 1034169 (+) |
| CI01000050_01039500_01042679 | TLR9 | coding | downstream | 41617 | 1039500 ~ 1042799 (+) |
| CI01000050_01048195_01109752 | NA | coding | downstream | 50087 | 1047970 ~ 1109752 (+) |
| CI01000050_01261502_01265283 | PARAPINOPSINA | coding | downstream | 263484 | 1261367 ~ 1265283 (+) |
| G212296 | NA | non-coding | upstream | 57515 | 909813 ~ 910029 (+) |
| G212294 | NA | non-coding | upstream | 139459 | 827818 ~ 828085 (+) |
| G212293 | NA | non-coding | upstream | 140416 | 826804 ~ 827128 (+) |
| G212104 | NA | non-coding | upstream | 203109 | 763998 ~ 764435 (+) |
| G212269 | NA | non-coding | upstream | 220966 | 745947 ~ 746578 (+) |
| G212366 | NA | non-coding | downstream | 174251 | 1172134 ~ 1176043 (+) |
| G212376 | NA | non-coding | downstream | 198142 | 1196025 ~ 1201801 (+) |
| G212357 | NA | non-coding | downstream | 235209 | 1233092 ~ 1233734 (+) |
| G212466 | NA | non-coding | downstream | 334484 | 1332367 ~ 1336316 (+) |
| G212473 | NA | non-coding | downstream | 360720 | 1358603 ~ 1363929 (+) |
| G212184 | NA | other | upstream | 533338 | 433684 ~ 434206 (+) |
| G212006 | NA | other | upstream | 829533 | 82604 ~ 138011 (+) |
| CI01000050_00012155_00026251 | NA | other | upstream | 941132 | 12079 ~ 26412 (+) |
| CI01000050_01296683_01297763 | SELENOK | other | downstream | 298763 | 1296365 ~ 1298255 (+) |
| CI01000050_01691894_01697791 | SULT1ST2, SULT1ST3 | other | downstream | 693920 | 1691374 ~ 1698973 (+) |
| G212927 | NA | other | downstream | 1776956 | 2774839 ~ 2775133 (+) |
| CI01000050_02852118_02864754 | RNF122 | other | downstream | 1844936 | 2852118 ~ 2865822 (+) |
| CI01000050_03807697_03808793 | CLCN5B, CLCN5 | other | downstream | 2807260 | 3805143 ~ 3808870 (+) |
