CI01000050_01261502_01265283 (PARAPINOPSINA)


Basic Information

Item Value
gene id CI01000050_01261502_01265283
gene name PARAPINOPSINA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 1261367 ~ 1265283 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_01261502_01265283.mRNA
ACATAAAAAGAGCAGAGGAGTCTTTGCATCCTTCCTGACAGAGACTCTCTTTGTGTACAGGTTATATGCCATCTCCCTCAACTATACATATTATCAGTGTTCTAGCTCTTCTTGTATGAGGTTCAGTTTGAGAAAATGGCCATAACTGCATCAGAAAGCACTACGCCAGCCAGTGCAGTGAATGATGACATCATGCCAAGGATGGGCTACATTATTCTGGCAGTTATTATTGGTTTCTTCTCTGTTTTTGGCATCATACTGAACATGACCGTGATCGTGGTGACGCTGAAGCACAGGCAGCTGCGACAGCCGCTGAACTTCGCTCTGGTCAACCTAGCTGTGGCTGATCTCGGTTGTGCAATGTTTGGAGGACTGCCAACCACGGTGACCAATGCCATGGGCTACTTCAGCCTGGGCAGGGTGGGGTGTGTGCTAGAGGGGTTTGCCGTGGCCTTCTTTGTTGCCATAATTGCGGTTGAGCGCTGCTTGGTGGTTTGCAGGCCGGTGGGTTCCATCACCTTCCAGACGAGACATGCAGTCGCAGGAGTCGTCATGGCCTGGGTCTGGTCGTTCCTCTGGAACACCCCACCTCTTTTTGGATGGGGTAGATATGAGCTGGAGGGTGTGCAGACGTCTTGTGCACCTGACTGGTACAGCAGAAATTTGGCCAATGTCTCCTACATCATTTGTTACTTTCTCCTCTGCTTTGCACTGCCTTTCTCTGTCATTGTCATCTCCTACACTCGCCTCCTGTGGACCTTGCGGCAGGTGAGCAGACTGAAAATGTCAGAGGGAGGAAGCACTGCCAGGGCCGAGGCACAGGTGGCCTGTATGGTGATTGTCATGGTGATGGCCTTCCTGCTCACCTGGCTGCCCTACGCTGCATTTGCCTTGTCTGTGATCTTAGACCCAAACCTTTACATTGACCCAGTGATCGCCACAGTTCCCATGTATCTGGCCAAGAGCAGCACAGTTTTCAACCCCATAATCTACATATTCATGAACAGACAG

Function

symbol description
parapinopsina Enables G protein-coupled photoreceptor activity. Acts upstream of or within absorption of UV light; phototransduction, UV; and phototransduction, visible light. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; eye; gut; heart; and integument.

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04251 OPN1LW, OPN1MW; long/medium wavelength-sensitive opsin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_01261502_01265283.mRNA True 1011 mRNA 0.51 3 1261367 1265283

Neighbor

gene id symbol gene type direction distance location
CI01000050_01048195_01109752 NA coding upstream 151615 1047970 ~ 1109752 (+)
CI01000050_01039500_01042679 TLR9 coding upstream 218568 1039500 ~ 1042799 (+)
CI01000050_01023375_01033682 APEH coding upstream 227198 1023375 ~ 1034169 (+)
CI01000050_01002924_01005496 NA coding upstream 255853 1002924 ~ 1005514 (+)
CI01000050_00967544_00997883 BSN, BSNA coding upstream 263484 967544 ~ 997883 (+)
CI01000050_01284083_01292321 NA coding downstream 18736 1284019 ~ 1293720 (+)
CI01000050_01296683_01297763 SELENOK coding downstream 31082 1296365 ~ 1298255 (+)
CI01000050_01301443_01316664 ACTR8 coding downstream 36160 1301443 ~ 1317171 (+)
CI01000050_01346318_01366815 CHDH coding downstream 80912 1346195 ~ 1367657 (+)
CI01000050_01374628_01443035 NA coding downstream 108996 1374279 ~ 1443180 (+)
G212357 NA non-coding upstream 27633 1233092 ~ 1233734 (+)
G212376 NA non-coding upstream 59566 1196025 ~ 1201801 (+)
G212366 NA non-coding upstream 85324 1172134 ~ 1176043 (+)
G212296 NA non-coding upstream 351338 909813 ~ 910029 (+)
G212294 NA non-coding upstream 433282 827818 ~ 828085 (+)
G212466 NA non-coding downstream 67084 1332367 ~ 1336316 (+)
G212473 NA non-coding downstream 93320 1358603 ~ 1363929 (+)
G212508 NA non-coding downstream 244650 1509933 ~ 1510161 (+)
G212522 NA non-coding downstream 281738 1547021 ~ 1548377 (+)
G212527 NA non-coding downstream 295845 1561128 ~ 1561354 (+)
G212184 NA other upstream 827161 433684 ~ 434206 (+)
G212006 NA other upstream 1123356 82604 ~ 138011 (+)
CI01000050_00012155_00026251 NA other upstream 1234955 12079 ~ 26412 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other downstream 426520 1691374 ~ 1698973 (+)
G212927 NA other downstream 1509556 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 1577536 2852118 ~ 2865822 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 2539860 3805143 ~ 3808870 (+)

Expression


Co-expression Network