CI01000050_01048195_01109752


Basic Information

Item Value
gene id CI01000050_01048195_01109752
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 1047970 ~ 1109752 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_01048195_01109752.mRNA
CCATAAAAGGAAAAGAAAATTCAATGAATAATAGATAGAGGCAGAAACCTGTAGTACAATTGCTCAGCGATGACATGCAAGGAAACCTAGGCAGAAAGAAACGAAGAACAAACACGTACATGCAGCTTAGCTATTAAAACATCAAAAAAAGGAAACAAGTACTGTTATAAACACAAGAGGACGTCATCTTCAGGTCAGTGTAAGAAAGCCATAGAAAAACAGAGAATGACGAGCCGACATCCCTGTTTCTATCGAGTTCCTCCGCAGGAGTTACACGGGAGAAACCATCTAACGGAAGCCACCCAGACTAAAGTCCTGAACACCGTCATCAGTGTAAAGAGAACATCGCCAGCTTTGTGTTATGAGCCTGATTTCATATGGAAGGACACCAAACTTGCATCACTGGAGCGCAATATTCGAGACCTGGAGGACGAGATCCAAACGATGAAGACAAATGGCCTTTTGCACACAGATGGCCGGGGTGAAGAATTCAAACAGATGGAAGTCTATAAGAACCACTCAAAGTTCATGAAGAACAAGATTGATCTGCTGAAACAGGAAGTAGTAAAGAAAGAGTCTGAGTCGATGACACTGCAAACGAAGCTTGACGCACTGACCAATCAAAACTCAGACTGCAAACAGCACATAGAGGTCCTGAAGGAGTCTCTCACAGCCAAAGAACACCGAGCTTCTGTCCTTCAGACAGAGGTGGATGCTCTCCGTCTGCGTCTGGAGGAGAGAGAGTTGTTCCTAAACAAGAAAAGCAAACAGATCCAGGATCTCATAGAAGAGAAGGGAACACTGAACAGTGAGATATGTGACCTGAAGGACATGTTGGAGGTCAAGGAGAAGAAGATCAAGATCCTGCAGAAAAAGGCTGAGAACCTGCAGGAACAGTTAAAGGACAGGGACAAACAGTTGGACAGTTTGGGGGACAGAATGACGTCTCTGCAGGCCGACTCCAGCAACACGGACACCGCTCTCATTACACTGGAAGAGGCTCTCTCTGAGAAGATAGAAGAGGCAGAAATGCATAAGAATGAAAATAAGGAACTGAAAAGCAAACTTGCCTCCCTACAAGAGCGTCTCTCAGAAAAAGAGGTATTGAAGGCGTGTGAAGCGGATCATGTGGCTCGCTGGAACCCTGAGCTGTCGGAGCGGCTGCAGGTTCTCCAGGCGGAAGCTGTCCGTCATAAAGAGGAAGAGGAGAAGTCTAATGCTGAAGTCCAGAGAGTGCTGGCTCTTTTGCGGGAGCTGCAGTCTGAACGTCTGGAGCAGGACAAGAGAATCATCGAGCTGGAGAGACAAGTGAAGGAGCAGAACCAAAAGCAGTCTGTGAACCCAGGCCAAGCAGGAGAAATGACTCCCAACACTCAAAGACAGATGGACGATTTGATGTCGGCTCTAGACAAAACCAGAAAAGAGTTGGATGTCACAAGGCTGCAGTTGTCGTCGACGCAGAATACTCTGACTGAACGTGACAATGAGCTGAGCAGGATACGAGCTGATCACAGTAAACAGCTAACAGAGATCCTGCAGTTAAAACAACAGGCTCTGATGGCTGCCGTCAGTGAAAAAGATGGCTGCATCAGTCTACTAGAACTTTCTCCCGTCAGAAACATGTCGACCCCTGAAGACGTGATGACCTTGAGGAGAGAGAAGGAGAGGTTCATGAATCACCAAAAACAGCAGGCCAAACAGATGACTTGTAAACAGTTGGGAACGAGAGAAGGAATTTCAGGGAAGATGATGAGGACGGCATATGGGCATGACAAACCAAAAATTGGTCATGTACTGAAGGGTGTTAAGACTGCACCACGGCCTATCATTAACACAATGAGATCTCAGAGCAGAGCAAGTGTTAATTTCTCCACAGCTCAGTCATCTGTCCCTGAGCATGAACACAATGACCTCTGTGAGCACAAGCCTATAGGCCTCCATGCTGAGAAAGAACGGCACACGGCTGGCCTGATAATAAAAATCAGCCATGGGTACATGGAAAAAAAGGCCGGAATGATGGTCAAGCTGAAGCTGATGTGCTCAGTCTTGGACACACGACACGCTGTGCTCGCAATGACCTTCTGTGCCTTCTTTATGCATGTTATTGTGGAAGCTAACTCGTGGTGGTCTCTAGCAATGAACCCCCTCCTGATACCAGAAGCATATATCATAGGAGGTCAGCCGCTGTGCAGTCAACTGGAAGGACTGTCCAAAGGTCAGAGGAAGCTTTGCCAGCTGTACCAAGATCACATGCATTTCATTGGAGAGGGTGCCAAGACGGGCATCCAGGAGTGCCAATACCAGTTTCGCCAGCGCCGCTGGAACTGCAGCACAGTGGACAACTCCTCAGTGTTCGGCAGAGTCATGCAGATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_01048195_01109752.mRNA True 2374 mRNA 0.47 17 1047970 1109752

Neighbor

gene id symbol gene type direction distance location
CI01000050_01039500_01042679 TLR9 coding upstream 5171 1039500 ~ 1042799 (+)
CI01000050_01023375_01033682 APEH coding upstream 13801 1023375 ~ 1034169 (+)
CI01000050_01002924_01005496 NA coding upstream 42456 1002924 ~ 1005514 (+)
CI01000050_00967544_00997883 BSN, BSNA coding upstream 50087 967544 ~ 997883 (+)
CI01000050_00931338_00939002 DCAF1 coding upstream 108968 931338 ~ 939002 (+)
CI01000050_01261502_01265283 PARAPINOPSINA coding downstream 151615 1261367 ~ 1265283 (+)
CI01000050_01284083_01292321 NA coding downstream 174267 1284019 ~ 1293720 (+)
CI01000050_01296683_01297763 SELENOK coding downstream 186613 1296365 ~ 1298255 (+)
CI01000050_01301443_01316664 ACTR8 coding downstream 191691 1301443 ~ 1317171 (+)
CI01000050_01346318_01366815 CHDH coding downstream 236443 1346195 ~ 1367657 (+)
G212296 NA non-coding upstream 137941 909813 ~ 910029 (+)
G212294 NA non-coding upstream 219885 827818 ~ 828085 (+)
G212293 NA non-coding upstream 220842 826804 ~ 827128 (+)
G212104 NA non-coding upstream 283535 763998 ~ 764435 (+)
G212269 NA non-coding upstream 301392 745947 ~ 746578 (+)
G212366 NA non-coding downstream 62382 1172134 ~ 1176043 (+)
G212376 NA non-coding downstream 86273 1196025 ~ 1201801 (+)
G212357 NA non-coding downstream 123340 1233092 ~ 1233734 (+)
G212466 NA non-coding downstream 222615 1332367 ~ 1336316 (+)
G212473 NA non-coding downstream 248851 1358603 ~ 1363929 (+)
G212184 NA other upstream 613764 433684 ~ 434206 (+)
G212006 NA other upstream 909959 82604 ~ 138011 (+)
CI01000050_00012155_00026251 NA other upstream 1021558 12079 ~ 26412 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other downstream 582051 1691374 ~ 1698973 (+)
G212927 NA other downstream 1665087 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 1733067 2852118 ~ 2865822 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 2695391 3805143 ~ 3808870 (+)

Expression


Co-expression Network