CI01000050_01346318_01366815 (CHDH)


Basic Information

Item Value
gene id CI01000050_01346318_01366815
gene name CHDH
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 1346195 ~ 1367657 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_01346318_01366815.mRNA
CTATATATATGCACTATATCCTGTATCACCTTGTGTGTTTAATGCAGTGTTCTCTGCCTTTGCTTTCTCAAGGCTGCAGATAAGCATCAGTGCAGCACTTTGAAGGCTGTGGTCTCCGTCAGTATGACTTGCTTCTCGTCGTCTGTGAGGCTCACCTCCAGCATTCGTAGGTACATGGGCGTGTTACGCTTCCCACACTCATGTCCAGCGCTGCTACAAAACCACATCTATCATCACAGGTGTAACAGTACGGCAGTGAATAAGAGCACAGCGTCCTGCAGCTATGTTATCGTTGGAGCTGGATCTGCAGGTTGCGTTCTGGCCAACCGTCTGTCAGAGAATGCGTCCGATTCGGTGCTCCTTCTGGAAGCCGGACCCAAAGACAAGCAGCTGGGAAGCACCCGTCTGTCCTGGAAGATCCACATGCCCGCCGCTCTGACCTATAACCTCTGCGACGACAAGTATAACTGGTATTACCATACATTACCTCAGGCACACATGGATGACAGGGTGATGTACTGGCCGCGCGGCCGTGTTTGGGGCGGATCGTCGTCGCTCAATGCCATGGTGTACATTCGGGGCCACGCAGAGGACTACAACCGCTGGCAGAGGGAGGGAGCTGAAGGCTGGGACTACGATCACTGTCTGCCGTACTTCCGAAAGGCCCAGACGCATGAGCTTGGAGCCAACCGATACCGAGGGGGCGACGGCCCGCTGCATGTGACGCGAGGAAAGACCGATCACCCTCTGCACCACGCGTTCATCAAAGCGGGCCAGCAGGCTGGATACCCCTTTACAGATGATATGAATGGATTCCAGCAGGAAGGAGTGGGCTGGATGGATATGACCATCCACAGAGGTAAGCGATGGAGCACAGCTAGTGCTTACCTTCGGCCTGCGCTGTCCAGACCCAACCTGAGAACAGAAGTGCGCTGCATGGTGACCCGTATCCTGTTTGATGGGACGCGTGCGCGAGGGGTGGAGTACCAGCAGAATGGACAGATGAAAAAGGTGTTTGCTGATAAGGAGGTCATTCTCAGCGGTGGAGCCATAAACTCTCCGCAGCTCCTCCTGCTGTCTGGAGTGGGAAACGCAGATGAGCTTCGCAAACACGATATTCCGGTGACACAGCATCTCCCAGGTGTGGGCATGAATCTTCAGGACCATCTGGAGCTGTATGTGCAGCATCGCTGTACTCAACCCATCACTCTGTACAAAGCCCAGAAGCCCTTCCATATGCTGAAGATCGGCATGGAATGGCTTCTCAAATTCACAGGCTACGGTGCTACGGCTCATCTGGAGAGCGGCGGTTTCATCCGCAGTCGGCCTGGCGTTCCTCATCCTGATATTCAGTTCCACTTCCTGCCCTCTCAGGTCATCGATCACGGTCGCGTTAAATCCAAGATTGAGGCCTTCCAGGTTCATGTTGGACCCATGAGGAGCACCAGTGTTGGGTGGATCAAACTGAAGAGTAAAGACCCAAAGGCCCACCCGATCATCCAGCCTAACTACCTTTCCACCGACACTGACGTGTGGGAGTTCAGAGAGAGCGTTAAGCTCACGCGGGAAATCTTCGCTCAAGAGGCCTTCGACCCGTTCCGGGGCCCCGAGGTGCTGCCCGGCCCTGCCGTCCAATCTGACGCGGAGATCGACGCTTTCGTTCGGCAGAAGGCGGACAGCGCTTACCACCCCTCCTGTACGTGTAAGATGGGCAGCGCCGCGGACAGCATGGCGGTGGTGGGTCCGGATCTGCGCGTGTACGGTGTGGAGGGGCTGAGGGTGGTGGACGCCTCCATCATGCCCAGCATGCTCAGTGGGAACTTGAACGCCCCCACCATAATGATCGCAGAGAAGGCGGCGGACGCCATTAAAGGGATTCCCTCCCTTCACGACCCTGGAGTTCCTGTTTACCGGCCCAAGAGTCTCGAGACACAGAGATGAGACCTGAGAATGCTTCAGATGGGAGCCGTGCCTCCGGGTTTAATTCTGCCACATGATCTAACCACTCTTCAGTCTTAGGCAGCTTAGCGTTATCCTGAAAGTGACCGATATCAATGCATGCTAAATTCAGACGTACGTTATAAAGAGGGATAATTGCTGACATGTTTATATATCATGTGATGTGTATTCATACGACCATAACAACACGTAAAGGCGAATCTCTTGTTTTTCTCCTCAAAATCAGAATATGAAGCATAAATGGTAACAGTTTACGATAAGGTTTCATTAGTTAACATGAACTAATGATAAACACTAACATGTTAACTAATTGGTCCTTATAGTGAAGTGTTACTGCATTAATTAAAGCTTGTACAATAATTATTTGATAATACATAATTTATTTAATGTTACAGTGCATTGCAGTAATGCAGCTCAGAACAATACAAAAAACCTTAATGGTTCTGAAATGGGTTTAACTGCCTTATTTGTAGTTTGATTTTGAGGTGAAATATGACCAGACGTGATCTTGATCATTTACATAAATGTCTTAATGAAACTTTAGTGCATTTCCACATTATCAGCATGACAGAATTATGAGTGAATGAAACCTTTCAGCTGCTGAGCCTAACAACAGGAACCAAGTGTATGTGAAAATAACTCTGTAATGTTTACAAAGTGTAGAAGAGAGAACCTTTACACTTCTGTGTTCTTTATACTGTTACGATGGGTTTTAAAACACTATTAAATTAGAGTAGAATAAGAAAAAGAATATAACAAACACTAATTTTAAATGATGGAAAACACATGTAATCACTACAACAAATTGTCTTAAATCAAAAAGA

Function

symbol description
chdh Predicted to enable choline dehydrogenase activity. Predicted to act upstream of or within glycine betaine biosynthetic process from choline. Predicted to be active in mitochondrial inner membrane. Orthologous to human CHDH (choline dehydrogenase).

GO:

id name namespace
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K00108 betA, CHDH; choline dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_01346318_01366815.mRNA True 2783 mRNA 0.49 7 1346195 1367657

Neighbor

gene id symbol gene type direction distance location
CI01000050_01301443_01316664 ACTR8 coding upstream 29024 1301443 ~ 1317171 (+)
CI01000050_01296683_01297763 SELENOK coding upstream 47940 1296365 ~ 1298255 (+)
CI01000050_01284083_01292321 NA coding upstream 52475 1284019 ~ 1293720 (+)
CI01000050_01261502_01265283 PARAPINOPSINA coding upstream 80912 1261367 ~ 1265283 (+)
CI01000050_01048195_01109752 NA coding upstream 236443 1047970 ~ 1109752 (+)
CI01000050_01374628_01443035 NA coding downstream 6622 1374279 ~ 1443180 (+)
CI01000050_01552520_01553273 NA coding downstream 184697 1552354 ~ 1553646 (+)
CI01000050_01644444_01659372 GABRD, GBRD coding downstream 276787 1644444 ~ 1659412 (+)
CI01000050_01662474_01662718 NA coding downstream 294817 1662474 ~ 1662736 (+)
CI01000050_01674592_01678560 SULT1ST1, SULT1ST2, SULT1ST3 coding downstream 306935 1674592 ~ 1678560 (+)
G212466 NA non-coding upstream 9879 1332367 ~ 1336316 (+)
G212357 NA non-coding upstream 112461 1233092 ~ 1233734 (+)
G212376 NA non-coding upstream 144394 1196025 ~ 1201801 (+)
G212366 NA non-coding upstream 170152 1172134 ~ 1176043 (+)
G212296 NA non-coding upstream 436166 909813 ~ 910029 (+)
G212508 NA non-coding downstream 142276 1509933 ~ 1510161 (+)
G212522 NA non-coding downstream 179364 1547021 ~ 1548377 (+)
G212527 NA non-coding downstream 193471 1561128 ~ 1561354 (+)
G212543 NA non-coding downstream 253162 1620819 ~ 1625233 (+)
G212550 NA non-coding downstream 269662 1637319 ~ 1637547 (+)
G212184 NA other upstream 911989 433684 ~ 434206 (+)
G212006 NA other upstream 1208184 82604 ~ 138011 (+)
CI01000050_00012155_00026251 NA other upstream 1319783 12079 ~ 26412 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other downstream 324146 1691374 ~ 1698973 (+)
G212927 NA other downstream 1407182 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 1475162 2852118 ~ 2865822 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 2437486 3805143 ~ 3808870 (+)
CI01000050_03938328_03956122 RHOBTB2 other downstream 2582945 3931890 ~ 3957044 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017249 chdh coding CM030122.1 CM030122.1 51830852 ~ 51837789 (-)