CI01000050_01644444_01659372 (GABRD, GBRD)


Basic Information

Item Value
gene id CI01000050_01644444_01659372
gene name GABRD, GBRD
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 1644444 ~ 1659412 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_01644444_01659372.mRNA
GGCCATGCTGAGTGATATTGGTGACTATGTAGGCACAGACATTGAAATATCCTGGTTGCCTAATCTGGATGATCTAATGAAAGGTTATGCTCGAAACTTTCGCCCAGGGATCGGAGGACCCCCAGTGAATGTCTCCATGGCTATTGAAGTAGCCAGTATTGACCATATCTCAGAAGCCAACATGGAATACACCATGACGGTATTTCTGCGGCAGAGTTGGAGAGATGACCGTCTGTCCTACAACTACACGAACAAAACTCTCGGCCTGGACAGCCGCTTCGTAGACAAACTCTGGGTACCAGACACATTCATTGTTAACGCCAAATCAGCCTGGTTTCATGATGTTACTGTGGAGAACAAACTCATACGCCTGCAGCCTGATGGAGTCATTCTCTACAGCAGTCGAATTACATCTACAGTTGCATGTGACATGGACCTCACCAAATACCCCATGGATGAACAGGAATGCATGCTAGACTTGGAAAGCTACGGCTACTCTTCAGAGGACATTGTGTATCACTGGTCAGAGAGTCAAAAAATCATTCATGGGCTGGACAAACTGGAGCTGTCCCAGTTCACCATCACAGATTATCGCTTTGTCACGGAGCTGCTGAACTTTAAATCCGCGGGGAGATTTCCACGTCTCAGCTTACGATTCCAACTAAGGCGAAACCGAGGAGTTTACATCATCCAGTCCTACATGCCCTCCATCCTACTGGTTGCCATGTCATGGGTTTCATTCTGGATCAGCCAATCAGCTGTGCCTGCAAGAGTGTCTTTAGGAATCACAACGGTGCTCACCATGACAACGCTGATGGTCAGTGCTCGTTCATCATTGCCCCGCGCTTCTGCCATTAAAGCTCTGGACGTGTATTTCTGGATCTGCTATGTCTTTGTCTTCGCTGCCTTGATCGAATACGCTTTTGCTCACTATAATGCAGACTACAGCAAGAAGGAGAAAGCCAAAGTCAAGACGAATAAAAACACAGAGTCCATGGTGAAAAATGGGAAGCAGGCCATGGTTCTCTTTTCGCTCTCTGTGACTGGCATGAACCAGGGCCTGCTCATCTCAAACAGGCAAAGCAGGGCCCAGCGGACCACTGACCCTTCTGGAGAGCCGCGCGAAGAGACCGAGGTTCGTGGCACTCAATCCCGTCGGGCACAGAAGGAAAGCAGTGAAGAGAAGAAATGCTGCAAGTGTAAACCCATTGACGCCGACACCATCGATATCTACGCTCGGGCTGTCTTCCCTTTCACCTTTGCCGTGGTCAATGTCATCTACTGGGTGGCATACACAATGTAAATGATCCATAAAAATTTGAGTTCTGCATGTATATATATCA

Function

symbol description
gabrd Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in idiopathic generalized epilepsy 10. Orthologous to human GABRD (gamma-aminobutyric acid type A receptor subunit delta).

GO:

id name namespace
GO:1902711 GABA-A receptor complex cellular_component

KEGG:

id description
K05184 GABRD; gamma-aminobutyric acid receptor subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_01644444_01659372.mRNA True 1343 mRNA 0.48 8 1644444 1659412

Neighbor

gene id symbol gene type direction distance location
CI01000050_01552520_01553273 NA coding upstream 90798 1552354 ~ 1553646 (+)
CI01000050_01374628_01443035 NA coding upstream 201264 1374279 ~ 1443180 (+)
CI01000050_01346318_01366815 CHDH coding upstream 276787 1346195 ~ 1367657 (+)
CI01000050_01301443_01316664 ACTR8 coding upstream 327273 1301443 ~ 1317171 (+)
CI01000050_01296683_01297763 SELENOK coding upstream 346189 1296365 ~ 1298255 (+)
CI01000050_01662474_01662718 NA coding downstream 3062 1662474 ~ 1662736 (+)
CI01000050_01674592_01678560 SULT1ST1, SULT1ST2, SULT1ST3 coding downstream 15180 1674592 ~ 1678560 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 coding downstream 31962 1691374 ~ 1698973 (+)
CI01000050_01701779_01712905 RBSN coding downstream 42202 1701614 ~ 1713078 (+)
CI01000050_01803081_01804190 B3GALT4 coding downstream 141196 1800608 ~ 1806958 (+)
G212550 NA non-coding upstream 6897 1637319 ~ 1637547 (+)
G212543 NA non-coding upstream 19211 1620819 ~ 1625233 (+)
G212527 NA non-coding upstream 83090 1561128 ~ 1561354 (+)
G212522 NA non-coding upstream 96067 1547021 ~ 1548377 (+)
G212508 NA non-coding upstream 134283 1509933 ~ 1510161 (+)
G212554 NA non-coding downstream 6338 1665750 ~ 1666027 (+)
G212560 NA non-coding downstream 63459 1722871 ~ 1723075 (+)
G212450 NA non-coding downstream 73592 1733004 ~ 1746070 (+)
G212444 NA non-coding downstream 74647 1734059 ~ 1748023 (+)
G212184 NA other upstream 1210238 433684 ~ 434206 (+)
G212006 NA other upstream 1506433 82604 ~ 138011 (+)
CI01000050_00012155_00026251 NA other upstream 1618032 12079 ~ 26412 (+)
G212927 NA other downstream 1115427 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 1183407 2852118 ~ 2865822 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 2145731 3805143 ~ 3808870 (+)
CI01000050_03938328_03956122 RHOBTB2 other downstream 2291190 3931890 ~ 3957044 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002239 gabrd,LOC107690714,LOC107711789,LOC107684467 coding CM030136.1 CM030136.1 8712465 ~ 8720117 (-)