CI01000050_01701779_01712905 (RBSN)


Basic Information

Item Value
gene id CI01000050_01701779_01712905
gene name RBSN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 1701614 ~ 1713078 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_01701779_01712905.mRNA
GTATTTAACACGTGTTTTATCTTGAGTTATCACAGTTGTTTATGTAATATTAATATTTTTTATTGTTTGAGTGATGGAGAGGGTCTGGGGTGGCCGGTGCTGTCAGACAGGTGCAGCGTAATCTCAGAAGCGTTGGATCCAGCCTCTCACATCCAAACCCACCTTATGGCCTCCATGTACCCGCCATCATTAGAGGAATCAGCTGAGGTGAAGGAGGGCTTCCTGTGCCCACTCTGTTTGAAAGACCTTCAGTCCTTCTACCAGCTACAAGACCATTATGAAGAGGAACACTCCGGAGACAACCGGCACGTCAGTGGCCAGCTGAAAAGCCTGGTGCAAAAGGCAAAGAAAGCCAAAGACAAGCTGTTAAAGCGGGATGGAGATGAGCGGACAGACAGCAGCTATGAGTCATTTTATTATGGAGGAGTGGACCCGTACATGTGGGAGCCGCAGGAGCTCGGAGCCACCCGCAGTCACTTGGATTCTTTCAAGAAGCAAAGAGCTGCAAGAATCGACCATTATGTTATTGAGGTCAACAAATGCATTATACGACTGGAAAAGCTAACCTCCTTTGACAGAACCAGCATGGATGCAGCGCAAATAAGATCACTTGAGAAATCGGTGGTATCATGGGTGAATGACCAGGATGTGCCATTTTGCCCTGATTGTGGGGGAAAATTCAACATCCGTAACCGCCGCCACCATTGCCGACTCTGTGGTTCCATTATGTGCAGAAAGTGCACACAGTTTGTGCCCCTGCCACTGGCATACAAATTAACCAGTGGAACCAGGGAGGCGCTGTGGGCTCCGGGCCAGAGTGGCTCTCCAGGAAGCACAGGCCCGGTGGTGCAGCAGACTCTTCGCCGCGGCTCCATTAGCAGCATCTCGTCCGTCACCTCTGTGTTGGAGGAGAAAGATGAGGACCGTGTACGCTGTTGCCGTCACTGCATGGACGTACTGCTCCGGCACCAGCGCAAACTGGAGGAAAAAGACCACGTGCCTGATATCGTCAAACTCTATGAGAGGTTAAGGACGTGTATGGAGAAAGTTGAAGCTAAGGCTCCAGAATACACTCGCATGGCAGAGTCGCTCAATGCTGGGGAGACGACCTATAGTCTAGAGAATGCTGCTGGACTGAGGATGGAAATACAGAAATACTACGAGCTCATTGATGTTCTGAGTAAGAAGATACTCACACTCGGGCTGAAAGAAGAGGTCCAGCCTCACCCGAAAGCCCTGCAGCTGCAGAGGATGGTGCGCTACACAGCTACGCTCTTTATACAGGAGAAACTGTTGGGTCTGACATCCCTCCCCACAAAGGAGAAACATGAGGAGCTTAAAGAGAAGAGAAGAGAGGAGCTGGAGAAAAGAGCTCAGCAGGAGAGACAGGCAGGCCTGGAGTCACAAAAACGTCGACTGGAAAATGAAAAGAACAGACCGACCCTCAGTGCAAATGGGGATATTCCCGGTCCACGCGTGACCAAAGCTGCAGGCTGGCTGCCACAATCAGACTCTCTTCATACTCGCTCAGAGCTGGACGACCCTCTGCTGCAGCAGATCAAAAACATCGAGTCTTTCTTGCGGCAGGCGCGCTCCGCCAACCGCACCGATGAAGTGGCCATGCTGGAGGAGAACCTGCGGCAGCTTCAGGACGAGTTTGACGCTCAACAGACCAGTCGAGCCATCCGACTTTCACAGAGGTTGGCCGAGGAGACGGACCTTCAGCAGAGCCAGATCGAACATCTACAGCAAAGAGAGCTGGAGCACAGAGCCCACACTAAAACCTCCTCCTCAGACTTAAGAGACCAAAAGAGAGAAGAGGAGGAAGGTGAACGTTTGATCGGAAGCCCTGAGTCTTTCTCACGTCTGTTAGGAAACTCTCCTCCCTTGGACAGACAGAGAGAAAAACATACACCGACTCAACCAGCCAGAAACCCCTTCGAAGAGGAGCACTTCTCTCCAGTTGAGGAGAAACCAACAAACTCTCAGACGGCCAATGGAAAGAAAGAGTACAACCCATTTGAGGAAGAGGATGACGAAACTGAAGATCCAGATACAGGTAAAGCGAAGTCGCCTAGAAATCCCTTTGAAGATGAAGATTGTGAAGATGGAGGGAATCCTTTTAAAGAGGTTTCTGATGAAATTCCAGCTACGTCGACCAATCCGTTTGATGAAGATGACGATGAGGATGGCATGGCAATTGACGACACGATTGAGGAAGAGCTGCTGCTACAACAGATTGATAATATCCGGGCGTATATCTTTGATGCCAAGCTAAGCGGACGTTCTGATGAAGTGGAGCTTTTGTCGGAGAACCTGAAGGAGCTGCAACGCACACTACAAGAGCAGAAAAGAAAAAAATAGCGGCCGACGCAGACTTGTTTTGCAACTGACAAGGCTTGTTTTCAGTTACAAACATACACTGATGCACTAGACAAAAATGTAAAACAAATGAGAATTTTCTGTGCAAGAATAGTCGTAGAAACACAAAGACAGAGAATTGTAATCAAATTGCATTGACTTAAATTTGCAATTTA

Function

symbol description
rbsn Predicted to enable metal ion binding activity.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_01701779_01712905.mRNA True 2537 mRNA 0.49 11 1701614 1713078

Neighbor

gene id symbol gene type direction distance location
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 coding upstream 2879 1691374 ~ 1698973 (+)
CI01000050_01674592_01678560 SULT1ST1, SULT1ST2, SULT1ST3 coding upstream 23054 1674592 ~ 1678560 (+)
CI01000050_01662474_01662718 NA coding upstream 38878 1662474 ~ 1662736 (+)
CI01000050_01644444_01659372 GABRD, GBRD coding upstream 42202 1644444 ~ 1659412 (+)
CI01000050_01552520_01553273 NA coding upstream 147968 1552354 ~ 1553646 (+)
CI01000050_01803081_01804190 B3GALT4 coding downstream 87530 1800608 ~ 1806958 (+)
CI01000050_01877310_01902523 ADGRD2 coding downstream 164232 1877310 ~ 1902773 (+)
CI01000050_02211327_02213220 NA coding downstream 497716 2210794 ~ 2213489 (+)
CI01000050_02268620_02283626 NADK, NADKA coding downstream 555542 2268620 ~ 2285331 (+)
CI01000050_02290349_02305843 WDR46 coding downstream 575849 2288927 ~ 2306023 (+)
G212554 NA non-coding upstream 35587 1665750 ~ 1666027 (+)
G212550 NA non-coding upstream 64067 1637319 ~ 1637547 (+)
G212543 NA non-coding upstream 76381 1620819 ~ 1625233 (+)
G212527 NA non-coding upstream 140260 1561128 ~ 1561354 (+)
G212560 NA non-coding downstream 9793 1722871 ~ 1723075 (+)
G212450 NA non-coding downstream 19926 1733004 ~ 1746070 (+)
G212444 NA non-coding downstream 20981 1734059 ~ 1748023 (+)
G212564 NA non-coding downstream 36946 1750024 ~ 1753308 (+)
G212592 NA non-coding downstream 141635 1854713 ~ 1854923 (+)
CI01000050_01296683_01297763 SELENOK other upstream 402008 1296365 ~ 1298255 (+)
G212184 NA other upstream 1267408 433684 ~ 434206 (+)
G212006 NA other upstream 1563603 82604 ~ 138011 (+)
CI01000050_00012155_00026251 NA other upstream 1675202 12079 ~ 26412 (+)
G212927 NA other downstream 1061761 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 1129741 2852118 ~ 2865822 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 2092065 3805143 ~ 3808870 (+)
CI01000050_03938328_03956122 RHOBTB2 other downstream 2237524 3931890 ~ 3957044 (+)
G214717 NA other downstream 2394504 4107582 ~ 4108280 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036809 rbsn coding NC_007119.7 CM002892.2 53150972 ~ 53169445 (-)