Gene
RNA
| Item | Value |
|---|---|
| gene id | G212444 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000050 |
| NCBI id | null |
| chromosome length | 7556436 |
| location | 1734059 ~ 1748023 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU240978 | True | 1090 | lncRNA | 0.35 | 2 | 1734059 | 1748023 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000050_01701779_01712905 | RBSN | coding | upstream | 20981 | 1701614 ~ 1713078 (+) |
| CI01000050_01691894_01697791 | SULT1ST2, SULT1ST3 | coding | upstream | 35324 | 1691374 ~ 1698973 (+) |
| CI01000050_01674592_01678560 | SULT1ST1, SULT1ST2, SULT1ST3 | coding | upstream | 55499 | 1674592 ~ 1678560 (+) |
| CI01000050_01662474_01662718 | NA | coding | upstream | 71323 | 1662474 ~ 1662736 (+) |
| CI01000050_01644444_01659372 | GABRD, GBRD | coding | upstream | 74647 | 1644444 ~ 1659412 (+) |
| CI01000050_01803081_01804190 | B3GALT4 | coding | downstream | 52585 | 1800608 ~ 1806958 (+) |
| CI01000050_01877310_01902523 | ADGRD2 | coding | downstream | 129287 | 1877310 ~ 1902773 (+) |
| CI01000050_02211327_02213220 | NA | coding | downstream | 462771 | 2210794 ~ 2213489 (+) |
| CI01000050_02268620_02283626 | NADK, NADKA | coding | downstream | 520597 | 2268620 ~ 2285331 (+) |
| CI01000050_02290349_02305843 | WDR46 | coding | downstream | 540904 | 2288927 ~ 2306023 (+) |
| G212560 | NA | non-coding | upstream | 10984 | 1722871 ~ 1723075 (+) |
| G212554 | NA | non-coding | upstream | 68032 | 1665750 ~ 1666027 (+) |
| G212550 | NA | non-coding | upstream | 96512 | 1637319 ~ 1637547 (+) |
| G212543 | NA | non-coding | upstream | 108826 | 1620819 ~ 1625233 (+) |
| G212564 | NA | non-coding | downstream | 2001 | 1750024 ~ 1753308 (+) |
| G212592 | NA | non-coding | downstream | 106690 | 1854713 ~ 1854923 (+) |
| G212596 | NA | non-coding | downstream | 118535 | 1866558 ~ 1866975 (+) |
| G212609 | NA | non-coding | downstream | 182136 | 1930159 ~ 1931975 (+) |
| G212430 | NA | non-coding | downstream | 208008 | 1956031 ~ 1988166 (+) |
| CI01000050_01296683_01297763 | SELENOK | other | upstream | 434453 | 1296365 ~ 1298255 (+) |
| G212184 | NA | other | upstream | 1299853 | 433684 ~ 434206 (+) |
| G212006 | NA | other | upstream | 1596048 | 82604 ~ 138011 (+) |
| CI01000050_00012155_00026251 | NA | other | upstream | 1707647 | 12079 ~ 26412 (+) |
| G212927 | NA | other | downstream | 1026816 | 2774839 ~ 2775133 (+) |
| CI01000050_02852118_02864754 | RNF122 | other | downstream | 1094796 | 2852118 ~ 2865822 (+) |
| CI01000050_03807697_03808793 | CLCN5B, CLCN5 | other | downstream | 2057120 | 3805143 ~ 3808870 (+) |
| CI01000050_03938328_03956122 | RHOBTB2 | other | downstream | 2202579 | 3931890 ~ 3957044 (+) |
| G214717 | NA | other | downstream | 2359559 | 4107582 ~ 4108280 (+) |
