G212609


Basic Information

Item Value
gene id G212609
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 1930159 ~ 1931975 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU241156
AGGCCGTAATGATAGCCGGACACTTTATCTCCGCACACCGGACACAGTTCCTCCAGCTCTTCATCTGCCGTGAAGTCCATCCTCCTGTCAATCAACTCAATCGCCTGATTCTGTCAGAGACGCTGGACCTGCGCGTGCAGCATGCGTGAGCGGCTTCAGACGAGCGTCGTTCCCGTTCGGCTCCAGTGATGTAACGCGGTCCGTTCAGTCCTTCAGAAACTTCAGGAGGAATCTAACAGGTCTCAGGTCTTCCTCGGAGTCTGAACGTCTTCCTCTGAGTGTTGGCGAGGTCTTCATTGGATAGCGCGCTCATGTGACAGCTCTCGTGAAGATGATGCGCGCCAGTCGTTACAGCCGCAGCATTTTATTATCAGTCCAGAGGGGGGAAAAAACAAAAAAGTTTGCCAATTTACACCATTGATCATTGGTACATTAACAAATGATATAATGCAAAAACAAATTGTTGTTCAAATTTTGTTCTGCTATAGTCGTTTTTATTGTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU241156 True 503 lncRNA 0.48 2 1930159 1931975

Neighbor

gene id symbol gene type direction distance location
CI01000050_01877310_01902523 ADGRD2 coding upstream 27386 1877310 ~ 1902773 (+)
CI01000050_01803081_01804190 B3GALT4 coding upstream 123201 1800608 ~ 1806958 (+)
CI01000050_01701779_01712905 RBSN coding upstream 217081 1701614 ~ 1713078 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 coding upstream 231424 1691374 ~ 1698973 (+)
CI01000050_01674592_01678560 SULT1ST1, SULT1ST2, SULT1ST3 coding upstream 251599 1674592 ~ 1678560 (+)
CI01000050_02211327_02213220 NA coding downstream 278819 2210794 ~ 2213489 (+)
CI01000050_02268620_02283626 NADK, NADKA coding downstream 336645 2268620 ~ 2285331 (+)
CI01000050_02290349_02305843 WDR46 coding downstream 356952 2288927 ~ 2306023 (+)
CI01000050_02308087_02311804 NA coding downstream 375264 2307239 ~ 2311898 (+)
CI01000050_02328316_02331115 TUBB4A.S, MGC53997, TUBB4B, TUBB4A, TUBB4B.L, TBB2C, TUBB2B coding downstream 396251 2328226 ~ 2331515 (+)
G212596 NA non-coding upstream 63184 1866558 ~ 1866975 (+)
G212592 NA non-coding upstream 75236 1854713 ~ 1854923 (+)
G212564 NA non-coding upstream 176851 1750024 ~ 1753308 (+)
G212444 NA non-coding upstream 182136 1734059 ~ 1748023 (+)
G212450 NA non-coding upstream 184089 1733004 ~ 1746070 (+)
G212430 NA non-coding downstream 24056 1956031 ~ 1988166 (+)
G212621 NA non-coding downstream 128167 2060142 ~ 2064799 (+)
G212670 NA non-coding downstream 161884 2093859 ~ 2094122 (+)
G212631 NA non-coding downstream 209356 2141331 ~ 2147657 (+)
G212629 NA non-coding downstream 263327 2195302 ~ 2198879 (+)
CI01000050_01296683_01297763 SELENOK other upstream 630553 1296365 ~ 1298255 (+)
G212184 NA other upstream 1495953 433684 ~ 434206 (+)
G212006 NA other upstream 1792148 82604 ~ 138011 (+)
CI01000050_00012155_00026251 NA other upstream 1903747 12079 ~ 26412 (+)
G212927 NA other downstream 842864 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 910844 2852118 ~ 2865822 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 1873168 3805143 ~ 3808870 (+)
CI01000050_03938328_03956122 RHOBTB2 other downstream 2018627 3931890 ~ 3957044 (+)
G214717 NA other downstream 2175607 4107582 ~ 4108280 (+)

Expression


Co-expression Network