CI01000050_02290349_02305843 (WDR46)


Basic Information

Item Value
gene id CI01000050_02290349_02305843
gene name WDR46
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 2288927 ~ 2306023 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_02290349_02305843.mRNA
CTATAAATTTAGGGCTTTTTATTGAAGTGTGAATTCCAACGCAACACTTTAAGTAAGTATCTAAACATTTATTATTTGACTGTTTTATAATGGCCTAAAATGTTTAAAGGGGGACAATTATGCCCCTTTTACAAGATGTAATATAAGTCTCTGGTGTCCCCAGAATGTGTTTGTGAAGTTTCAGCTCAAAATACCCCACAGATCATTCATTATAGCTGGTCAAATTTGCCCCTATTTGGATGTGAGCAAAAACACGCCGTTTTTGTGTGTGTCCCTTTAAATGCAAATGAGCTGCTGCTCCCGGCCCCCTTTCCAGAAGAGGGTGGGGCTTTAACAGCTCACGCTTCGGTCGCTCAACAACAACAAAGCTGGAGAATCTCACGCAGACAAAATGAGGATTGTCAGTAACGGTGTTCAGCCTTACATTGTTCAAACCGGAGTCGACACTGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGAATGAAACTGGACGTTTCTGAATGGTTAGTGGATAAATTTATGTAGTTGCTGTGGAGTTGATTCAACTCATCCACTAGCATGTGTCGTCATGGTAATCTTTTGTGCAAATCCAGCGTTGAATTGACCCTCGTTTGTGAAGCAGTCTGGCGTAAAATGACGGCATGACAACAACACTCTACTACAACAACTCTTCCTCTTCTCTAAAGCAGCCCAACATGGCCTCACCCCCTTTGTTGTGTGTTCTCGGGGGCGGGGTTTATGTAAATTTCAGGGTTTGTGATGTCACCAACCCGGGAAGAAGCTCGTTGTAGTCCCTACCAGCCGTTTGTTGTAGTCCTTAAACAAAGAATTCTGTAAAAGAAAATATCTCCCTTTGCATTGAACTTTTTTGATCATCGTAACTTTGCAGATGTTGTTTCTGCTCAAACAGCAACATTACACACTAACTAAAGCTAAAAAAGTGAAATCATAATCAACCACCCCTTTAACGACCAACAGATATCCAGTGATGCAAAAAACTCAACTGTTTTATCAAATGTTGCCGTTTTGAAAATATATATATAATTTACATAAGTCATATAATTCATAACTGAATGTGACGAAGTTTGTGTTTTTGAGATATTACATATAGGAATAAGAGTGAATGTGTGCATATTTTAAAGTAAAATATTATTTGCAAATAATTTAAATTGATTACTTCACGAAAACAATTTGACAACAAAACCGTTTTTATTTATCCCTTAGATCCCCTTTGAACCTTATTTAATTCCTTTATATATTTAATAAAATTAAATAAATAAAGGAATATTCAAGACATCATTACAGGACAAATGCTCCACACTCCAGATCGGCAGGTGGCGATAATGTACCTTTAAGCTGTTTGACAATCGCCAATACACGTTAGAAGAGGAATTAGGCTACAGTCCTGTAAAACAAAAATGGCGGCGCCAATGCCGGAGGGTTTGCCGAGCACACACGTGGAGAAAAAGAATAAGAAAAAGACATTTATTCCTGATAGAAAATGTAAAAAAGAAAACATTTATGAACTGATTTCTGAAAACATTTATCGATGTGTTTGGCTTTTCCTCACTCAGCCCTTAAAACGCTATTGGGAGGAAGCAGAAAAACCCGACCAAAGGAAACCAGAGGAAGAACAGAGTAAAGCTGCGCAGAACCAGAATAAAGCAAGAGTACAAAAAAGGCCATTTGAAAGGAAGAATTATGAACGTTACAAACCAGAGGTACTGGACCCTTTTCCTGATCAGGCTCCTGTTCCAAGAGAACGGCTCCAGAAGTTTAAGAGAGGAGAGAAACACAAAATGCCTCCAGGAGCCCTGAGGAAGCTGAAAACGGCCATCTTGTTCTCGGAGACGATGTCTAAACTCGCTCAAGATGAGGCAGCAAGATATGATCTCCTGCTTCCAGAGGATGCTGGCTTCCTGGAGGGAGACAAGGATGAAGACACATGTACAATCTCTCAAGATGACATAGCAGATGCTGTTGACATCACTTCTGGATCGAAGTACTTCAACTTGCATCTTTCCCAGTTTGGGCCATATAGGCTTGACTACAGCAAAAATGGACGGCATCTGCTATTGGGTGGAAAGAAAGGTCATGTGGCCTGCATCGACTGGCATTCCAAAGACCTAATGTGTGAGATGAATGTCATGGAAACGGTGAATGATGTCAAGTGGCTTCACACAGAGTCCATGTTTGCTGTGGCACAGAAGAGATGGCTCTACATCTATGACTCTAAAGGTGTGGAGCTCCACTGCATCAAGAAGTTCAACGACGTCTTGAAAATGCAGTTTCTGCCCTACCACTTCCTACTCGCCACTGCGAGTGCCACAGGGTTTCTGCAATATCTGGATGTGTCGATTGGTAAAGAGATCGCAGCCATCTGCACAAAAATGGGGCGGCTGGATGTGATGGCACAGAATCCCTATAATGCAGTAATTCACCTGGGTCACCCAAATGGCACCGTCACTCTGTGGTCACCCAACCAGAAAGAGCCACTCGTGAAGCTGTTGTGTCATCGGGGGGCTGTTCGCTCCTTAACGGTGGATAAAACCGGCATGTACATGGTGACGTCAGGTCTGGACAGGAAGCTGAAGGTGTATGACATCAGAGCGTTTAAAAACCTTCACTCCTGTTTCCTTCCTGCTGGAGCCTCTTGCCTGTCTCTGAGCCAGAGAGGACTGCTTAGTGCTGCTACTGGAGATGTCGTACAGGTTTATCGGGACGTTTGTGGAAGCAATCCTTTATCCAAACCCTACATGGCTCACCGCCTTCGAGGGCAAGTTTGCGGTGTTGCATACTGCCCTTTTGAGGATGTTCTGGGAATCGGACATGGACAGGGCTTCACCAGCATGATCGTACCAGGTGCCGGAGAACCGAATTTTGATGCCCTTGATGCAAACCCTTACCGCAGCTCTAAGCAGAGACAGGAGTGGGAGGTCAAGGCTCTGCTGGAGAAGGTGCAGCCTGAGCTGATATGTTTGGACCCGGGACAGCTGGGTAAAGTGGACCAGGCCACCTTTGAGGAGAAGCACAAGAGACGGGTTGAGAGGCTGGGCTTTGATCCATTGGGAAAAGCGCCATTTAAACCCAGAGTAAAGCAGAAAGGAAGAAGCTCGGCTGGTGCCGTGGAGAAAATAAAGAGAAAAGTCGCCTATGAGGATCAGAGGGATGTAATTCGACAGTCTATTCAAGAGAAAATGGAAAGACAGAAAGAGCTGGAAGAGAAGGCCAAAGAAAAGAAAGAGTTAGAAACGAAGACAACTCTTGACCGTTTCAGGAAGTAGAGCGAAGATCCCTGACTGCTGTGAACATGAGGACTAACTCATAGGAGAATACAGGATTCATACGGGCTCGTCTGTTGCGCGTTTGAGGATGCTGTTGTACAAGAAATTTTTATAACAAAACCTCTGGATGTCTTCTAGTGTTGCATGATTGTGTACAAAACAAAGCTTTTTGCTTGTTTA
>TU241294
AATGAGCTGCTGCTCCCGGCCCCCTTTCCAGAAGAGGGTGGGGCTTTAACAGCTCACGCTTCGGTCGCTCAACAACAACAAAGCTGGAGAATCTCACGCAGACAAAATGAGGATTGTCAGTAACGGTGTTCAGCCTTACATTGTTCAAACCGGAGTCGACACTGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGAATGAAACTGGACGTTTCTGAATGGTTAGTGGATAAATTTATGTAGTTGCTGTGGAGTTGATTCAACTCATCCACTAGCATGTGTCGTCATGGTAATCTTTTGTGCAAATCCAGCGTTGAATTGACCCTCGTTTGTGAAGCAGTCTGGCGTAAAATGACGGCATGACAACAACACTCTACTACAACAACTCTTCCTCTTCTCTAAAGCAGCCCAACATGGCCTCACCCCCTTTGTTGTGTGTTCTCGGGGGCGGGGTTTATGTAAATTTCAGGGTTTGTGATGTCACCAACCCGGGAAGAAGCTCGTT

Function

symbol description
wdr46 Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and segmental plate. Orthologous to human WDR46 (WD repeat domain 46).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_02290349_02305843.mRNA False 3468 mRNA 0.43 14 2288927 2306023
TU241294 True 506 lncRNA 0.47 1 2289212 2289717

Neighbor

gene id symbol gene type direction distance location
CI01000050_02268620_02283626 NADK, NADKA coding upstream 3596 2268620 ~ 2285331 (+)
CI01000050_02211327_02213220 NA coding upstream 75438 2210794 ~ 2213489 (+)
CI01000050_01877310_01902523 ADGRD2 coding upstream 386154 1877310 ~ 1902773 (+)
CI01000050_01803081_01804190 B3GALT4 coding upstream 481969 1800608 ~ 1806958 (+)
CI01000050_01701779_01712905 RBSN coding upstream 575849 1701614 ~ 1713078 (+)
CI01000050_02308087_02311804 NA coding downstream 1216 2307239 ~ 2311898 (+)
CI01000050_02328316_02331115 TUBB4A.S, MGC53997, TUBB4B, TUBB4A, TUBB4B.L, TBB2C, TUBB2B coding downstream 22203 2328226 ~ 2331515 (+)
CI01000050_02455292_02474612 NA coding downstream 146477 2452500 ~ 2474612 (+)
CI01000050_02475370_02481302 NA coding downstream 169347 2475370 ~ 2481302 (+)
CI01000050_02676712_02678594 UBE2D4, UBE2D4.L coding downstream 370689 2676712 ~ 2678633 (+)
G212742 NA non-coding upstream 38462 2250259 ~ 2250465 (+)
G212741 NA non-coding upstream 41639 2246954 ~ 2247288 (+)
G212626 NA non-coding upstream 56042 2232399 ~ 2232885 (+)
G212724 NA non-coding upstream 78385 2210265 ~ 2210542 (+)
G212710 NA non-coding upstream 80641 2207897 ~ 2208286 (+)
G212751 NA non-coding downstream 15262 2321285 ~ 2321544 (+)
G212754 NA non-coding downstream 21628 2327651 ~ 2327886 (+)
G212755 NA non-coding downstream 32166 2338189 ~ 2338462 (+)
G212757 NA non-coding downstream 34074 2340097 ~ 2340405 (+)
G212762 NA non-coding downstream 41134 2347157 ~ 2347412 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other upstream 591519 1691374 ~ 1698973 (+)
CI01000050_01296683_01297763 SELENOK other upstream 989321 1296365 ~ 1298255 (+)
G212184 NA other upstream 1854721 433684 ~ 434206 (+)
G212006 NA other upstream 2150916 82604 ~ 138011 (+)
CI01000050_00012155_00026251 NA other upstream 2262515 12079 ~ 26412 (+)
G212927 NA other downstream 468816 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 536796 2852118 ~ 2865822 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 1499120 3805143 ~ 3808870 (+)
CI01000050_03938328_03956122 RHOBTB2 other downstream 1644579 3931890 ~ 3957044 (+)
G214717 NA other downstream 1801559 4107582 ~ 4108280 (+)

Expression


Co-expression Network